Pairwise Alignments

Query, 407 a.a., type II secretion system protein GspL from Vibrio cholerae E7946 ATCC 55056

Subject, 395 a.a., general secretion pathway protein L (RefSeq) from Shewanella sp. ANA-3

 Score =  192 bits (489), Expect = 1e-53
 Identities = 123/404 (30%), Positives = 209/404 (51%), Gaps = 10/404 (2%)

Query: 5   VSEFLTVRLSSQKEADIPWLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAAS 64
           +SE L +RL    E    WLVWS ++QE+IASG++A  + L  +   A  R + VL+ AS
Sbjct: 1   MSERLFIRLGRTAEQACSWLVWSEQEQEIIASGELANAQGLSTLTERAGNRPIDVLVPAS 60

Query: 65  DLILTSVEIPPGASRQLENMLPYLLEDEIAQDVEDVHFCVLSKGRETADVVGVDRLWLRA 124
            + LTSV +P    RQ    LP++LE+ IA DV+ +HF V  +  +   VV V    ++ 
Sbjct: 61  AMTLTSVNLPEKGQRQALKALPFMLEETIADDVDAMHFTVGPRNGDALSVVAVAHEQMQT 120

Query: 125 CLDHLKACGFDVKRVLPDVLAIPRPEHGLAALQLGDEWLVRKSTTQGMAVDAQWLSLLAA 184
            L  L   G  VKR++PD LA+P  E   AA++ G+E L+R     G ++   WL +  A
Sbjct: 121 WLSCLAEAGLKVKRIVPDCLALPLQECQWAAMRFGNELLLRTGLGTGHSLPLPWLPV--A 178

Query: 185 SDWVQNEGEYLPLQALTPLPELSLAETQEWRYEPSGLVMQLLTQEALTSKFNLLTGSFKL 244
              +  + + + + + T   E+ L +  E + +P  L M +L +  L +  NLLTG +  
Sbjct: 179 MKQLTAQADEVSVASYT---EMEL-DGVELKPQPLDLPMLVLARGILHAPINLLTGVYTP 234

Query: 245 KSSWLRYWQIWRKVAIAAGLFVAVSISYSLFQAHQYEAQADAYRAESERIFRSIFPDKQK 304
           K  + ++   W+  AI  G+ + +S+       HQ   Q    +A+SE I++ + P   +
Sbjct: 235 KREYSKHLLQWKNAAIVLGVAIVLSLVNKGLTIHQVNGQIADLKAQSEAIYQQVVPGNSR 294

Query: 305 IPTVTYLKRQMSDEMARLSGGASVGSVLKWLSPLPEALKGV-NLQLQSIKFDSNRSEIRL 363
           I     L+ QM  ++  L G  S       L  L +A K V  L+  +++F+S R+EIR+
Sbjct: 295 I---VNLRSQMESQLRALQGQGSGAEFFAMLDGLQDAFKQVPELKPNTLRFESARNEIRM 351

Query: 364 EATSRDFQSFEQARTQLEQYFAVEQGQLNKNGEQVFGVFVVKPK 407
           + T++++   E+ +  + + F ++ G +N   +QV     ++ K
Sbjct: 352 QVTAKNYAQIEKFKEIVGRRFQMDGGTMNSGEDQVTSTLTLRSK 395