Pairwise Alignments

Query, 166 a.a., general secretion pathway protein GspM from Vibrio cholerae E7946 ATCC 55056

Subject, 158 a.a., general secretion pathway M protein (RefSeq) from Shewanella loihica PV-4

 Score =  121 bits (304), Expect = 5e-33
 Identities = 54/156 (34%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 9   VQAWWRSVTPREQKMVMGMGALTVLAIAYWGIWQPLSERTAQAQARLQTEKQLLSWVSEN 68
           ++ WW  +  REQ++V     + VL I YWGIW P+S+    AQ  L  ++  L++V + 
Sbjct: 4   IKTWWNGLVLREQQLVAACAIVLVLGIFYWGIWTPISQAEEDAQRNLTAQESTLNYVKQT 63

Query: 69  ANDIVTLRAQGGSDAPSDQPLNQVITNSTRQFNIELIRVQPRGEMMQVWIQPLPFSQLVS 128
           AN I  L+  GG    S   L+ V+T S + + +E+ R+QP+G  +QVW+  +PF  L+ 
Sbjct: 64  ANKIAGLKQSGGKKGFSGS-LSAVVTQSAKSYGLEITRMQPQGNKIQVWMDEVPFDSLLD 122

Query: 129 WIAYLQERQGVSVDAIDIDRGKVNGVVEVKRLQLKR 164
           +++ L +++G+S++ ID+  G+  G V+V+R+Q  +
Sbjct: 123 YLSDLVQQKGLSLENIDLADGETEGFVKVRRIQFSQ 158