Pairwise Alignments

Query, 252 a.a., type II secretion system protein N from Vibrio cholerae E7946 ATCC 55056

Subject, 251 a.a., general secretion pathway protein N (RefSeq) from Shewanella amazonensis SB2B

 Score =  118 bits (296), Expect = 1e-31
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 4/252 (1%)

Query: 1   MKRAVGYGLLFSTVLMTSVVVHLPAQVALSPLPLPEGLELTGIEGTLWQGQAAQVRWQGM 60
           M + +  G+L   V +   +V LPA + ++  PLP+G+ + G+ GTLWQG+AA V+ +  
Sbjct: 1   MFKKIVIGILLYVVFL---IVLLPASLVVALAPLPQGISIGGVTGTLWQGEAATVQIKDR 57

Query: 61  SLGDLNWDLHLSALLLGQLEADIRFGRGSSTQLRGKGVVGVGLSGPYADDFLLSLPAAQA 120
            L  + WD+H   LL G L AD++ G G ++ L+ KG +G   SG +  +  L       
Sbjct: 58  QLEQVKWDIHALKLLTGALAADVQIG-GRTSALQMKGELGWSFSGVHVANLKLDTGHGFL 116

Query: 121 ITWLPLPVPLMAQGQLEMAVKQYRFGEPYCQQAEGSLAWSAAQLESPIGALQLGTVVSDF 180
           +    LP     QG + + + +YR G+P C    G +    A L +  G   LG+V  + 
Sbjct: 117 LANTRLPFGAKVQGDVSLMLTEYRQGQPLCDSLAGKVFIQNANLTNQFGEYPLGSVELNL 176

Query: 181 TCQESVVTLKGGQKTAQVSSEFNLSLQPDNRYQAQAWFKPEAEFPESLKEQLSWLPQPDG 240
            C    V L   +   Q+     + L    +   +A  +      E +K+ L++L + D 
Sbjct: 177 ACDAGQVQLLAMEDKNQLGLTGTVLLADAGKLVVKAKIRETDFQTEDMKKALAFLGRKDA 236

Query: 241 QGRYPFNQQGQL 252
           +G YP   QG++
Sbjct: 237 EGYYPLVWQGKV 248