Pairwise Alignments

Query, 252 a.a., type II secretion system protein N from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., type II secretion system protein N (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (262), Expect = 9e-28
 Identities = 65/239 (27%), Positives = 106/239 (44%), Gaps = 1/239 (0%)

Query: 14  VLMTSVVVHLPAQVALSPLPLPEGLELTGIEGTLWQGQAAQVRWQGMSLGDLNWDLHLSA 73
           V +  ++   PA +A+   PLP+ +  +GI G++W G+   +  Q   L  ++W L    
Sbjct: 13  VYLVFLIALFPASLAVKLAPLPKQVSASGISGSIWSGEIDSLMLQKRRLEQVSWQLSPWG 72

Query: 74  LLLGQLEADIRFGRGSSTQLRGKGVVGVGLSGPYADDFLLSLPAAQAITWLPLPVPLMAQ 133
           LL G+   D   G   +T + GKG V + +SG  A       P+   +    LP      
Sbjct: 73  LLTGRANIDFVVG-SRATAVNGKGFVSLSMSGIDASGVRFDAPSEFLVGNARLPFRTQVG 131

Query: 134 GQLEMAVKQYRFGEPYCQQAEGSLAWSAAQLESPIGALQLGTVVSDFTCQESVVTLKGGQ 193
           G   + ++    G P+CQQ  G L     Q+ +  G   LG V    +C +  + ++   
Sbjct: 132 GNFSLMLQDLEQGVPWCQQLTGKLFAQQLQVNNQFGKYPLGDVAVALSCVDGNIKVQTDD 191

Query: 194 KTAQVSSEFNLSLQPDNRYQAQAWFKPEAEFPESLKEQLSWLPQPDGQGRYPFNQQGQL 252
               +    +  L+ D   Q  A  K     P+ LK+ LS+L + D QG YP N QG++
Sbjct: 192 SMNALGLSGHALLKADKLVQVTAKIKETEAQPDDLKQALSFLGKRDSQGYYPINYQGRV 250