Pairwise Alignments

Query, 252 a.a., type II secretion system protein N from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., general secretion pathway protein N (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.8 bits (247), Expect = 5e-26
 Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 1/239 (0%)

Query: 14  VLMTSVVVHLPAQVALSPLPLPEGLELTGIEGTLWQGQAAQVRWQGMSLGDLNWDLHLSA 73
           V +  +VV  PA VA+   PLP  + ++G+ G++W G    +  Q   L  + W+L   +
Sbjct: 13  VYIVFLVVLFPASVAVRLAPLPANVGISGVSGSIWSGSIETLNIQQRQLEQVRWELSPWS 72

Query: 74  LLLGQLEADIRFGRGSSTQLRGKGVVGVGLSGPYADDFLLSLPAAQAITWLPLPVPLMAQ 133
           L LG++  D + G   +T +  KG++   + G  A       P +  I    LP      
Sbjct: 73  LFLGKVTLDFQVG-SRATPVSAKGLITWSMGGVSAQGLRFEAPDSFLIGNAKLPFRTEIN 131

Query: 134 GQLEMAVKQYRFGEPYCQQAEGSLAWSAAQLESPIGALQLGTVVSDFTCQESVVTLKGGQ 193
           G++ + V+  + G+P+C+Q  G L  +   +++  G   LG +    +C E    L   +
Sbjct: 132 GEVSLLVETLKQGKPWCEQLSGKLFLNQTNVKNQFGNYPLGNIELGLSCVEGKAQLATDE 191

Query: 194 KTAQVSSEFNLSLQPDNRYQAQAWFKPEAEFPESLKEQLSWLPQPDGQGRYPFNQQGQL 252
              Q+     L L   N  +  A  K   E PE +++ LS L +    G +P   QG++
Sbjct: 192 SKNQLGIIGTLQLDEGNMVKVAAKIKETNEQPEDMRKSLSILGKRAEDGYFPIVYQGRI 250