Pairwise Alignments

Query, 252 a.a., type II secretion system protein N from Vibrio cholerae E7946 ATCC 55056

Subject, 253 a.a., type II secretion system protein N (RefSeq) from Shewanella sp. ANA-3

 Score = 98.6 bits (244), Expect = 1e-25
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 1/239 (0%)

Query: 14  VLMTSVVVHLPAQVALSPLPLPEGLELTGIEGTLWQGQAAQVRWQGMSLGDLNWDLHLSA 73
           V +  ++   PA VA+   PLP  + ++G+ G++W G    +  Q   L  + W+L   A
Sbjct: 13  VYLVFLLALFPASVAVRLAPLPANVGISGVSGSIWSGSIETLNLQQRQLEQVRWELSPWA 72

Query: 74  LLLGQLEADIRFGRGSSTQLRGKGVVGVGLSGPYADDFLLSLPAAQAITWLPLPVPLMAQ 133
           L LG+++ D + G   +T +  KG++   + G  A       P +  I    LP      
Sbjct: 73  LFLGKVKLDFQVG-SRATPVSAKGLITWSMGGISAQGLRFEAPDSFLIGNAKLPFRTEIN 131

Query: 134 GQLEMAVKQYRFGEPYCQQAEGSLAWSAAQLESPIGALQLGTVVSDFTCQESVVTLKGGQ 193
           G++ + V+    G+P+C+Q  G L  +   +++  G   LG +    +C E    L   +
Sbjct: 132 GEVSLLVETLEQGKPWCEQLSGKLFLNQTNVKNQFGNYPLGNIELGLSCVEGKAQLATDE 191

Query: 194 KTAQVSSEFNLSLQPDNRYQAQAWFKPEAEFPESLKEQLSWLPQPDGQGRYPFNQQGQL 252
              Q+     L L   N  +  A  K   E PE +++ L  L +    G +P   QG++
Sbjct: 192 SKNQLGIIGTLQLDEGNMVKVAAKIKETNEQPEDMRKSLGMLGKRGSDGYFPVVYQGRI 250