Pairwise Alignments

Query, 286 a.a., DNA utilization protein GntX from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., competence protein ComF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (268), Expect = 2e-28
 Identities = 77/227 (33%), Positives = 108/227 (47%), Gaps = 13/227 (5%)

Query: 64  LTPECHLCRLALDTNSPFGVCSAC-QAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWR 122
           L   C LC  +L++    G C  C  + L H   C  CG      ++ CG+C    P  R
Sbjct: 5   LPNRCLLCHQSLNSTEA-GFCHVCLHSGLYHSPICLGCGKSMQLELEYCGECQKHQP--R 61

Query: 123 KLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQIN--EPAPLLC------SVPLH 174
           K++    Y       +  +KYQ QF   P L   L  +++  E   L+        VPLH
Sbjct: 62  KVIAPCSYHQGFGPWIAAIKYQGQFAALPILCHALVERLSLLEQQGLITLPQAIVPVPLH 121

Query: 175 WRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLN 234
             R  QRGFNQ+ L+A EL+  L +    Q   RR+ T  Q GL+  QR  NL+DAF LN
Sbjct: 122 ANRLRQRGFNQAWLIAHELSQRLQLPLVDQGLTRRQDTRPQAGLNGVQRRRNLQDAFELN 181

Query: 235 HPPNQPHVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEP 281
                  +A+VDDVVTTG+T+  +   L +     + I+C+ R   P
Sbjct: 182 VDFAYQRIALVDDVVTTGTTVAEIA-RLFEARYVHVQIWCLARAEAP 227