Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

 Score =  962 bits (2486), Expect = 0.0
 Identities = 500/781 (64%), Positives = 606/781 (77%), Gaps = 20/781 (2%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA EL VRP+QV AAV L+D+G+TVPFIARYRKEVTG LDDTQLRNL+ RL YLR
Sbjct: 3   SINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRYLR 62

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E+D+RR +IL SI+EQGKLTPEL++ I  AD+K RLEDLYLPYK KRRTKGQIA+EAGL 
Sbjct: 63  ELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAGLG 122

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
            LAD L+  P+  PE EA ++I+AEKG AD KA L+GA+ I+MER AEDA+LL K+R  L
Sbjct: 123 ELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRDFL 182

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
             NA + +RV+ GKE  G KF DYF+H E +   PSHRALA+ RGRNEG L+++L    E
Sbjct: 183 KHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVGDE 242

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
              S      E +I E +GI      AD W  +V+ W WK+K+  H+ET+L+  ++++AE
Sbjct: 243 TPGSMHPG--EGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDKAE 300

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            +AI VFA NL DLL+AAPAGPRATL LDPGLRTGCKVAVVDATGK+L T T+YPHAP++
Sbjct: 301 DDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHAPRN 360

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAGASV 422
            +D  +  +A L  K  VDLIAIGNGTASRE+D  A +LI++   LK+ KIMVSEAGASV
Sbjct: 361 DWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLKLTKIMVSEAGASV 420

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELAAKEFP+LDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ  LA+ 
Sbjct: 421 YSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARS 480

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVDVNTASAALL R++GL++ LAQNIV +RD NG F+SRS LKKVPRL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVPRL 540

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G K FEQ AGFLR+M+G+NPLDASAVHPE YP+VK IA+   +D+++LIG++ FL+ L  
Sbjct: 541 GEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFLKRLDP 600

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
             +TDE FG+ TV+DI++EL+KPGRDPRPEFKTA F EG+ ++SDLE GMVLEGVV+NV 
Sbjct: 601 KQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVT 660

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
           NFGAFVDIGVHQDGLVHISAL+++F+ DP EVVKAGDIVKVKVMEVD+ R+R+ LSMR++
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGLSMRMS 720

Query: 723 DEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNA----------LGGAMGGAFAAAFAKAK 772
           D PG      ++  PR GQ R +    +PQGN                  A AA FA AK
Sbjct: 721 DTPG-----AKTDGPRGGQARGS--AGKPQGNTPRSERHAKEDKPAPANAAMAALFANAK 773

Query: 773 K 773
           +
Sbjct: 774 Q 774