Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., Transcription accessory protein (S1 RNA-binding domain) from Xanthomonas campestris pv. campestris strain 8004

 Score =  926 bits (2393), Expect = 0.0
 Identities = 488/783 (62%), Positives = 589/783 (75%), Gaps = 12/783 (1%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           +++ I   IA E+  +P Q  AA+ L+D+G +VPFIARYRKEVTGGLDDTQLRNL++RL 
Sbjct: 6   LAQQIARTIADEIGAQPAQARAAIALLDEGASVPFIARYRKEVTGGLDDTQLRNLETRLT 65

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE++DRR  IL SI EQGKL+ EL   I++AD+K+RLEDLYLPYKPKRRT+ QIA EA
Sbjct: 66  YLRELEDRRAAILSSIGEQGKLSDELRSEIVAADTKSRLEDLYLPYKPKRRTRAQIAREA 125

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLADTL   P   P++ AA Y++A+KGVAD KAAL+GARAI+MER  EDA L+ ++R
Sbjct: 126 GLEPLADTLLADPTQAPDTTAAIYVDADKGVADVKAALEGARAILMERWGEDAALVGELR 185

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
             LN N  I +RV EGKE+AG K++DYFDH E +++ PSHR LA+ R R E FL L L  
Sbjct: 186 SWLNDNGVIRARVAEGKEEAGAKYRDYFDHAESLARIPSHRLLALFRARREEFLYLDL-- 243

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP  +  A   Y E  +A   GI      AD W        W+ K+ MH+  +L +  +E
Sbjct: 244 DPGTDADAGHQYAEGRVARSAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQARE 303

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           +AE EAI VF  NLKDL++AAPAGPR  LGLDPG+RTGCK+AVVDATGK++AT+TIYPH 
Sbjct: 304 KAEAEAIAVFGDNLKDLMLAAPAGPRVVLGLDPGIRTGCKIAVVDATGKLVATETIYPHE 363

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
           P+ Q+D+++Q++  L  + NV+LIAIGNGTASRETD  A + I      K+QKI+VSEAG
Sbjct: 364 PKRQWDQSLQTLKKLCLQHNVELIAIGNGTASRETDKLAGEAIALCDRAKLQKIVVSEAG 423

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASE AAKEFPNLDVSLRGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDV Q  L
Sbjct: 424 ASVYSASEFAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQYRL 483

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           AK LDA VEDCVNAVGV VNTASAALL+RV+GLS+ +A+NIV +RD+NG F+ R  L KV
Sbjct: 484 AKALDARVEDCVNAVGVYVNTASAALLSRVSGLSSTVAENIVRHRDDNGPFKRRKDLLKV 543

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
           PRLG K FEQCAGFLRI DG  PLD SAVHPEAYPVV+ I     K +KAL+G+  FLR 
Sbjct: 544 PRLGDKTFEQCAGFLRIADGDEPLDVSAVHPEAYPVVERIVSSTGKPIKALLGDGSFLRA 603

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+   +TDE FGVPTV DI+KE++KPGRDPRPEFK A FAEGI ++  L+ GM+LEGVVS
Sbjct: 604 LKPEQFTDEQFGVPTVRDILKEMEKPGRDPRPEFKAAQFAEGIEDIKHLKPGMILEGVVS 663

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NVA FGAFVDIGVHQDGLVHISAL+D F+ DPR+VVKAGDIVKVKV+EVDV RKRIAL+ 
Sbjct: 664 NVAAFGAFVDIGVHQDGLVHISALSDTFVKDPRDVVKAGDIVKVKVLEVDVARKRIALTR 723

Query: 720 RLNDEPGQDNRSQRSAAPR-SGQERRAPRRDEPQGNALGGA--------MGGAFAAAFAK 770
           RL+D P   + + +S   R +GQ RR       +G A G A           A A AFA+
Sbjct: 724 RLSDTPPPADAAAQSRDTRGAGQGRRDGSGGGGRGPAAGTAKPRTSAPPANNALADAFAR 783

Query: 771 AKK 773
           AK+
Sbjct: 784 AKR 786