Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 772 a.a., RNA binding S1 from Pseudomonas syringae pv. syringae B728a

 Score =  981 bits (2536), Expect = 0.0
 Identities = 497/766 (64%), Positives = 611/766 (79%), Gaps = 4/766 (0%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA+EL VRP+QV AAV L+D+G+TVPFI+RYRKEVTG LDDTQLR+L+ RL YLR
Sbjct: 3   SINSRIAEELGVRPQQVAAAVALLDEGSTVPFISRYRKEVTGSLDDTQLRHLEERLRYLR 62

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E+D+RR +IL SI+EQGKLTPEL + I  AD+K RLEDLYLPYK KRRTKGQIA+EAGL 
Sbjct: 63  ELDERRVSILASIEEQGKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLG 122

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
            LAD L+  P+  PE+EAA++++A+KGVAD KAAL+GA+ I+MER AEDA+LL+K+R  L
Sbjct: 123 ELADGLFNDPSLAPEAEAARFVDADKGVADIKAALEGAKYILMERFAEDASLLDKLRSFL 182

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
            + A I +RV+ GKE+ G KF+DYF+H EP+   PSHRALA+ RGRNEGFL+  L    E
Sbjct: 183 KQEAVISARVVPGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGFLSSALKVGEE 242

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
           L  +     CE +I E +GI      AD W  +V+ W WK+K+  H+ET+L+  +++ AE
Sbjct: 243 LPGAMHP--CELMIGERFGIQNQNRPADKWLAEVVRWTWKVKLYSHLETDLLGELRDGAE 300

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VFA NL DLL+AAPAG RATLGLDPGLRTGCKVAVVDATGK+L   T+YPH P++
Sbjct: 301 TEAINVFAHNLHDLLLAAPAGQRATLGLDPGLRTGCKVAVVDATGKLLDYATVYPHVPKN 360

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAGASV 422
           Q+D+ +  +A L  K +VDLIAIGNGTASRETD  AADLIK+  +LK+ K+MVSEAGASV
Sbjct: 361 QWDQTIAVLAALCAKHSVDLIAIGNGTASRETDKLAADLIKKYPDLKMTKVMVSEAGASV 420

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELAAKEFP+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ  LA+ 
Sbjct: 421 YSASELAAKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 480

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVDVNTAS ALL R++GL+  LAQNIV +RDENG F++R+ALKKV RL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASVALLARISGLNTTLAQNIVAHRDENGAFKTRAALKKVSRL 540

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G K FEQ AGFLR+M G NPLDASAVHPEAYP+V+ IA +  +D+++LIG+  FL+ L  
Sbjct: 541 GEKTFEQAAGFLRVMTGDNPLDASAVHPEAYPLVQRIAAETDRDIRSLIGDASFLKRLDP 600

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
             +TDE FG+PTVTDI++EL+KPGRDPRPEFKTA F +G+ ++ DL++GM+LEGVV+NV 
Sbjct: 601 KKFTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVT 660

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
           NFGAFVDIGVHQDGLVHISAL+++FI DPRE VKAGD+VKVKVMEVD+ RKR+ LSMR++
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 720

Query: 723 DEPGQDNRSQRSAAPRSG-QERRAPRRDEPQGNALGGAMGGAFAAA 767
           D PG+     R A P S  ++  APR++         AM   FA A
Sbjct: 721 DTPGEKIDGARGARPGSSPRQNNAPRKETTAPAPANNAMASLFANA 766