Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  819 bits (2115), Expect = 0.0
 Identities = 445/771 (57%), Positives = 547/771 (70%), Gaps = 10/771 (1%)

Query: 2   SKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAY 61
           +K I   IA E+     QV AAV L+D G TVPFIARYRKEVTGGLDDTQLR L  RL Y
Sbjct: 5   AKPIAAIIASEIKATAAQVAAAVELLDGGATVPFIARYRKEVTGGLDDTQLRVLSERLTY 64

Query: 62  LREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAG 121
           LRE++ RR +I+ SI+ QGK+T ELE  I  A +K  LED+YLPYKPKRRTK +IA E G
Sbjct: 65  LRELEARRASIVDSIRSQGKMTDELEGKIAGAVTKAELEDIYLPYKPKRRTKAEIARERG 124

Query: 122 LEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQ 181
           L  LA+ + +  +  P   AA ++ A+  V D K ALDGAR I+ E ++E+A+LL ++R 
Sbjct: 125 LGALAEAILSDRSVAPAERAAAFLTAD--VPDVKTALDGARDIIAEAMSENADLLGRLRN 182

Query: 182 HLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNAD 241
           H+   A + +RV++GK+++G KF DYFDH E  +    HRALAMLRG NE  L++ +  D
Sbjct: 183 HMREVAFLRARVVDGKQESGAKFSDYFDHSERWATVAGHRALAMLRGWNEEVLSVDIVVD 242

Query: 242 PELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKER 301
            E   S R +  E +IA  Y +   +  AD W  +VI W W++K+S+ +  +LM  ++ER
Sbjct: 243 QEASPSLRPT--ERMIAAAYNVG-DRLPADRWLLEVIGWTWRVKLSLSLSLDLMRELRER 299

Query: 302 AEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAP 361
           AE EAI VFA NLKDLL+AAPAG RAT+GLDPG+RTG KVAVVD TGK+L T T+YP  P
Sbjct: 300 AEEEAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLLDTATVYPFPP 359

Query: 362 QHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGNL-KVQKIMVSEAGA 420
           ++        +A LV+K  V+LIAIGNGT SRET+   AD++      K  K++VSEAGA
Sbjct: 360 KNDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADMLAAMPAPKPTKVIVSEAGA 419

Query: 421 SVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLA 480
           SVYSASE AA EFP LDVSLRGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDV Q+ L+
Sbjct: 420 SVYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLS 479

Query: 481 KRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVP 540
           + LDA+VED VNAVGVD+NTASA LL RV+GL  + A+ IV +RD  G F SR  L KVP
Sbjct: 480 RSLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDAMGAFASRKELLKVP 539

Query: 541 RLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTL 600
           RLG + FEQCAGFLRI +G  PLDASAVHPEAY V K I     +D+++L+ ++  L+ L
Sbjct: 540 RLGARTFEQCAGFLRIPNGSEPLDASAVHPEAYGVAKKIVAACGRDVRSLMADSAELKKL 599

Query: 601 RAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSN 660
               + DE FG+PTV DI+ EL+KPGRDPRP FKTATFAEG+ ++ DL+VGM LEG V+N
Sbjct: 600 DPRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGVDDIKDLKVGMRLEGTVTN 659

Query: 661 VANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMR 720
           VA FGAFVDIGVHQDGLVH+S L DRF+ DP EVVKAGD+V+V+V EVDV RKRI LSMR
Sbjct: 660 VAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVQVRVTEVDVARKRIGLSMR 719

Query: 721 LNDEPGQDN-RSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAFAAAFAK 770
              E G D  R  R AAP+ G    + R   PQ  A  GA G A  AA  K
Sbjct: 720 --KEGGTDTPREARGAAPKGGNRGGSARSQTPQEPA-QGAFGAALMAAMKK 767