Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 778 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  986 bits (2550), Expect = 0.0
 Identities = 508/779 (65%), Positives = 624/779 (80%), Gaps = 7/779 (0%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+  I   IA ELNVR  QV A + L+DDG TVPF+ARYRKEVTGGLDDTQLR L SRL 
Sbjct: 1   MTSNIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLG 60

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE++DRR  IL SI  QGKLTPEL+ AIL ADSK RLEDLYLPYKPKRRTKGQIAIEA
Sbjct: 61  YLRELNDRRDVILSSIDAQGKLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEA 120

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           G+EPLA+ L  Q   +PE+EAA +IN E G AD++A LDGAR I+MER AEDA L+ K+R
Sbjct: 121 GIEPLANLLLQQRPANPEAEAAAFINTEAGFADTRAVLDGARYILMERFAEDAELIRKVR 180

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
           +HL+  A + S+VIEGKE+ G KF+DYF+H E ++K PSHRALAMLRGRNEG L+L++ A
Sbjct: 181 EHLSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVA 240

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ E  +  SYCE +IA H G+ L  + AD W K V++  W+IK+++ METE +S ++E
Sbjct: 241 DPDSEPGSG-SYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLRE 299

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           +AE +AI+VFA NL DLLMAAPAG +AT+GLDPGLRTG KVAVV+ TGK++A  TI+PH 
Sbjct: 300 QAEDDAIKVFARNLHDLLMAAPAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHE 359

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLI---KRGNLKVQKIMVSE 417
           PQ+Q+D++++++A LV    V+LIA+GNGTASRETD  AA+LI   K  +  + K+MVSE
Sbjct: 360 PQNQWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAELIAAVKEHHPTLTKVMVSE 419

Query: 418 AGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT 477
           AGASVYSASELAA EFP+LDVS+RGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDVSQ+
Sbjct: 420 AGASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQS 479

Query: 478 LLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALK 537
            L++ L+A+VEDCVN+VGVDVN AS  LL++V+GL+  LA+N+VDYRDE+G+F+SR  L 
Sbjct: 480 QLSQSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELL 539

Query: 538 KVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFL 597
           KVPRLGPKAFEQ AGFLRI +G NPLDASAVHPEAY +V+TIA+     L  LIGNTE +
Sbjct: 540 KVPRLGPKAFEQAAGFLRIREGDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELI 599

Query: 598 RTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGV 657
           RTL+A D+  + FG+PTVTDI+KELDKPGRDPR EFKTA F EG+ EV DL+  M+LEGV
Sbjct: 600 RTLKAGDFVTDAFGLPTVTDILKELDKPGRDPRGEFKTAHFKEGVTEVRDLKPEMILEGV 659

Query: 658 VSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
           V+NV NFGAFVD+GVHQDGLVHIS+L+D+F+SDP  VVKAGD+VKVKVMEVDV+RKRI L
Sbjct: 660 VTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGL 719

Query: 718 SMRLND--EPGQDNRSQRSAAPRSGQERRAPRRDEPQ-GNALGGAMGGAFAAAFAKAKK 773
           SMRL++  +P Q  + + + A R+ Q +    + +PQ   A+  AMG AFA AFAK KK
Sbjct: 720 SMRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMGNAFADAFAKMKK 778