Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., RNA-binding transcriptional accessory protein from Rahnella sp. WP5

 Score = 1012 bits (2616), Expect = 0.0
 Identities = 520/779 (66%), Positives = 625/779 (80%), Gaps = 10/779 (1%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+  +   IA EL VRPEQV + V L+D+GNTVPFIARYRKEVTGGLDDTQLR LD+RL 
Sbjct: 1   MNDQLSRIIASELQVRPEQVASVVRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLDTRLG 60

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE++DRRQTILKSI+EQGKL+ +L +AI +  SK  LEDLYLP+KPKRRT+GQIAIEA
Sbjct: 61  YLRELEDRRQTILKSIEEQGKLSDDLAKAINTTLSKTELEDLYLPFKPKRRTRGQIAIEA 120

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLA+ LW  P  +P++ AAK+I+A+KGVAD+KAALDGAR I+MER AEDA LL K+R
Sbjct: 121 GLEPLAELLWNDPQNEPDAAAAKFIDADKGVADTKAALDGARYILMERFAEDAALLAKVR 180

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA + SR++EGKEQ G KF+DYFDH EPIS+ PSHRALAM RGRNEG L L LNA
Sbjct: 181 DYLWKNAHLTSRMVEGKEQEGAKFRDYFDHHEPISQVPSHRALAMFRGRNEGILQLALNA 240

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++SY E LI +H G+ L+ A AD WR+ V++W W+IK+ +H+ETELM  ++E
Sbjct: 241 DPQHDEPPKESYAEQLIIDHLGLRLNNAPADVWRRAVVNWTWRIKVLLHLETELMGTVRE 300

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           RAE EAI VFA N+ DLLMAAPAG RAT+GLDPGLRTG KVAVVD TGK++  DT+YPH 
Sbjct: 301 RAEDEAINVFARNMHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDNTGKLVDIDTVYPHT 360

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A Q +A L  K NV+L+AIGNGTASRET+ F  +L K+   +K QK++VSEAG
Sbjct: 361 GQAA--KAAQQVAALCIKHNVELVAIGNGTASRETERFFLELQKQFPAVKAQKVIVSEAG 418

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA EFP+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ+ L
Sbjct: 419 ASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQSQL 478

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           AK+LD +VEDCVNAVGVD+NTAS  LLTRVAGL+  +AQNIV++RDENG+F +R  L KV
Sbjct: 479 AKKLDTVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVNWRDENGQFRNREQLLKV 538

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPE YPVV+ I       LK L+G++  LR 
Sbjct: 539 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPETYPVVERILAATQLALKELMGDSNVLRG 598

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+A ++TDE FGVPTVTDIIKEL+KPG DPRPEFKTATFAEG+  ++DL  GM+LEG V+
Sbjct: 599 LKASEFTDEQFGVPTVTDIIKELEKPGHDPRPEFKTATFAEGVETMNDLMPGMILEGSVT 658

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L ++F+ DP  VVKAGDIVKVKVMEVD+QRKRIAL+M
Sbjct: 659 NVTNFGAFVDIGVHQDGLVHISSLANKFVEDPHTVVKAGDIVKVKVMEVDLQRKRIALTM 718

Query: 720 RLNDEPGQDNRSQRSAAP----RSGQERRAPRRDEPQGNALGG--AMGGAFAAAFAKAK 772
           RL+++PG +  ++RS+AP    R  Q+R AP +   +  A  G  AM  A AAA  K +
Sbjct: 719 RLDEQPG-EAPARRSSAPASDSRDNQKRHAPNKPSGRNAAPAGNNAMADALAAALGKKR 776