Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 788 a.a., S1 domain-containing protein from Phaeobacter inhibens DSM 17395

 Score =  809 bits (2090), Expect = 0.0
 Identities = 441/792 (55%), Positives = 552/792 (69%), Gaps = 31/792 (3%)

Query: 2   SKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAY 61
           S  I   IA E+    +QV AAV L+D+G TVPF+ARYRKE TGGLDDTQLR L  RL Y
Sbjct: 4   SARISQTIATEIGAAAKQVSAAVVLLDEGATVPFVARYRKEATGGLDDTQLRRLAERLEY 63

Query: 62  LREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAG 121
           LRE++ RR  IL+S++ Q KLT  L  +I  A++K +LED+YLPYKPKRRTK  IA E G
Sbjct: 64  LRELEKRRAAILESVKSQDKLTDALATSIAKAETKAQLEDIYLPYKPKRRTKAMIARENG 123

Query: 122 LEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQ 181
           LEPLADT+      DPE+ A  YI   + VA +K AL+GAR I+ ER+ E A LL ++R 
Sbjct: 124 LEPLADTILADRTADPEALAQDYIT--EAVATAKDALNGARDILTERLTESAALLGRLRM 181

Query: 182 HLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNAD 241
            L + A + ++VIEGKEQ G KF DYF H E  +  PSHRALAMLRG NEG LTL +  +
Sbjct: 182 FLQKEAVVTAKVIEGKEQEGAKFSDYFHHTERWADVPSHRALAMLRGSNEGVLTLDVGPE 241

Query: 242 PELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKER 301
           PE E  AR    E ++A   G     A  D W ++V  W W++K+S+ M  ELM  ++ R
Sbjct: 242 PE-EGVAR---AEAMVAAELGAG-GNAPGDIWLRKVAGWTWRVKLSLSMMLELMGDLRGR 296

Query: 302 AEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAP 361
           A+ +AI+VFA NLKDLL AAPAG R TLGLDPG+RTG K AVVDATGK++AT+T+YP  P
Sbjct: 297 AQEDAIQVFARNLKDLLFAAPAGARPTLGLDPGIRTGVKAAVVDATGKLVATETLYPFQP 356

Query: 362 QHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGNLKVQ---KIMVSEA 418
           ++    A  SI  L+ +  V+LIAIGNGTASRET+   A+++K    KV+   K++VSEA
Sbjct: 357 KNDLRGAQVSIVKLIAEHGVELIAIGNGTASRETERMVAEVLKHLPAKVKAPTKVVVSEA 416

Query: 419 GASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTL 478
           GASVYSASELAA+EFP+LDVSLRGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDV Q  
Sbjct: 417 GASVYSASELAAREFPDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQHK 476

Query: 479 LAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKK 538
           L+K L+A++ED VNAVGVD+N ASA LL+ V+GL   LA+ IV +RD NG F SR  L K
Sbjct: 477 LSKSLEAVIEDVVNAVGVDLNMASAPLLSHVSGLGPGLAEAIVAHRDVNGAFASRRELLK 536

Query: 539 VPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLR 598
           V RLGPKAFEQCAGFLRI +GK PLDAS+VHPE+Y V + I     +D++ ++G+   L+
Sbjct: 537 VARLGPKAFEQCAGFLRIREGKEPLDASSVHPESYDVARKIVAACGRDIRQIMGDGAALK 596

Query: 599 TLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVV 658
           +LRA ++     G+PTV DI +EL+KPGRDPRP F TA+F +G+  ++DL+ GMVLEG V
Sbjct: 597 SLRAEEFVGGEVGLPTVRDIFEELEKPGRDPRPSFVTASFKDGVETITDLKPGMVLEGTV 656

Query: 659 SNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALS 718
           +NVA FGAFVDIGVHQDGLVH+S L DRF+ DP EVVK G +VKV V EVDV RKRIAL+
Sbjct: 657 TNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVVKVTVTEVDVPRKRIALT 716

Query: 719 MRLN-DEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALG-------------------G 758
           M+ +     ++ R+ R  A  +G  R+  +    +G   G                   G
Sbjct: 717 MKKDGGASAKEERTARGPAKGAG-TRQGGKPASGRGKGTGQNARQNSGQNRGQNTGQNPG 775

Query: 759 AMGGAFAAAFAK 770
           A+G A   AF K
Sbjct: 776 ALGAALMDAFKK 787