Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 763 a.a., RNA-binding transcriptional accessory protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  682 bits (1760), Expect = 0.0
 Identities = 375/744 (50%), Positives = 493/744 (66%), Gaps = 16/744 (2%)

Query: 9   IAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLREMDDR 68
           IA EL V  +QV A + L+D+G TVPFI+RYRKE TG LD+ ++  +  R+  LR++D R
Sbjct: 8   IAAELKVAEKQVTATINLLDEGATVPFISRYRKEATGSLDEVEVAAIRDRVLQLRDLDKR 67

Query: 69  RQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEPLADT 128
           R+ ILKS+ E GKLTPELE+ I  A++ + LED+YLP+KPKR+T+  +A E GLEPLA  
Sbjct: 68  REAILKSMTELGKLTPELEKKINEAETISLLEDIYLPFKPKRKTRASVAKEKGLEPLALQ 127

Query: 129 LWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLNRNAE 188
           ++ Q   D E+ A K+I+AEKGV     AL GAR I+ E I+E+     K+R +    A 
Sbjct: 128 IFEQHAFDLEASADKFIDAEKGVNSLDEALAGARDIIAEMISENVEARTKMRTYFQEKAS 187

Query: 189 IVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPELEESA 248
             S VI+GKE+ G K+KDYF+  EP+  A SHR LAM RG  E  L L L+A P  E++ 
Sbjct: 188 FKSEVIKGKEEEGIKYKDYFEWNEPVKTAASHRVLAMRRGEKE--LILRLDALPPAEDAI 245

Query: 249 RQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAEIEAIE 308
                   I E+  I L    A    +Q +   +K  +   METEL    K++A+ EAI 
Sbjct: 246 A-------ILENQFI-LGNNAASKQVQQALEDGYKRLLEPAMETELRVFTKQKADEEAIR 297

Query: 309 VFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQHQYDRA 368
           VFA N + LL+AAP G +  L +DPG RTGCKV  +D  G++L    IYPH  Q     A
Sbjct: 298 VFAENARQLLLAAPMGQKNVLAIDPGFRTGCKVVCLDKQGQLLENTAIYPHTGQGNVKNA 357

Query: 369 MQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGNLK-VQKIMVSEAGASVYSASE 427
             +I  L +K NV+ IAIGNGTA RET+AF   L    NL  +  +MV+E+GAS+YSASE
Sbjct: 358 EFTIQQLCEKHNVEAIAIGNGTAGRETEAFVRAL----NLPHITIVMVNESGASIYSASE 413

Query: 428 LAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKRLDAIV 487
           +A +EFP  D+++RGAVSI RRL DPLAELVKIDPKSIGVGQYQHDV Q  L   LD  V
Sbjct: 414 VAREEFPTQDITVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVDQNKLQASLDDTV 473

Query: 488 EDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRLGPKAF 547
              VNAVGV++NTAS  +L  V+GL   LAQNIVDYR+ +G F++R +LKKVPRLG KA+
Sbjct: 474 ISAVNAVGVELNTASKQILAYVSGLGPTLAQNIVDYRNTHGAFKNRESLKKVPRLGDKAY 533

Query: 548 EQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRAVDYTD 607
           EQ AGFLRI + +N LD S VHPE Y VV  +A+     + AL+ +T+  + ++   Y  
Sbjct: 534 EQAAGFLRIRNAENVLDTSGVHPERYAVVDKMAKDLGTTVSALMKDTQLQKQIKPQQYVT 593

Query: 608 ENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFGAF 667
           +  G+PT+TDI+KEL KPGRDPR +F+  +F +G++E+SDL VGM L G+V+N+ NFGAF
Sbjct: 594 DEIGLPTLTDILKELAKPGRDPREQFEAFSFTDGVNEISDLRVGMKLPGIVTNITNFGAF 653

Query: 668 VDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLNDEPGQ 727
           VDIGVHQDGLVH S L +RF+++P +VVK    V+V VMEVD  RKRI+LSM+    P  
Sbjct: 654 VDIGVHQDGLVHTSQLANRFVANPNDVVKVHQKVEVTVMEVDAARKRISLSMKTEVSPKS 713

Query: 728 DNRSQRSAAPRSGQERRAPRRDEP 751
           + RS+ S   +  QE + P   +P
Sbjct: 714 EVRSRESKEHKPKQEYK-PNNSKP 736