Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., RNA-binding S1 domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  973 bits (2514), Expect = 0.0
 Identities = 502/781 (64%), Positives = 616/781 (78%), Gaps = 17/781 (2%)

Query: 9   IAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLREMDDR 68
           IAQELNVR +QV A +TL+DDG TVPF+ARYRKEVTGGLDDTQLR L SRL YLRE++DR
Sbjct: 8   IAQELNVREQQVTATITLLDDGATVPFVARYRKEVTGGLDDTQLRTLYSRLGYLRELNDR 67

Query: 69  RQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEPLADT 128
           RQ IL SIQ QGKLT EL+ AI  ADSK RLEDLYLPYKPKRRTKGQIAIEAG+EPL D 
Sbjct: 68  RQVILSSIQAQGKLTAELQAAIDQADSKTRLEDLYLPYKPKRRTKGQIAIEAGIEPLVDR 127

Query: 129 LWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLNRNAE 188
           L +    D E+ A++Y+NAE G+ + KA LDGAR I+MER AEDA LL+K+RQHL + A 
Sbjct: 128 LLSDRQADIEALASEYLNAEAGLDEVKAVLDGARFILMERFAEDAELLQKVRQHLTQIAV 187

Query: 189 IVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPELEESA 248
           + S V++GKE+ G KF+DYF+H E +   PSHRALAMLRGRNEG L+L++NADP+  E+ 
Sbjct: 188 LESHVVKGKEKEGAKFRDYFEHSEKLMNVPSHRALAMLRGRNEGVLSLSMNADPD-SEAK 246

Query: 249 RQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAEIEAIE 308
             SYCE +IA+H+ + LS +  D W K V++  W+IKI++ METE ++ ++ERAE EAI 
Sbjct: 247 SGSYCEVIIADHFNLKLSDSAVDQWLKLVVTSTWRIKIALQMETEFIAKLRERAETEAIN 306

Query: 309 VFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQHQYDRA 368
           VFA NL DLLMAAPAG +ATLGLDPGLRTG KVA+V+ TGK++A  TI+PHAPQ+Q+D++
Sbjct: 307 VFARNLGDLLMAAPAGAKATLGLDPGLRTGVKVAIVNNTGKLMAHTTIFPHAPQNQWDKS 366

Query: 369 MQSIALLVKKFNVDLIAIGNGTASRETDAFAADLI---KRGNLKVQKIMVSEAGASVYSA 425
           ++++A LVK   V+LIAIGNGTASRETD  A +LI   K     + KIMVSEAGASVYSA
Sbjct: 367 IRTLANLVKMHKVELIAIGNGTASRETDKLAGELIAELKSELPTLTKIMVSEAGASVYSA 426

Query: 426 SELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKRLDA 485
           SELAA+EFP LDVS+RGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDVSQ+ L++ L+A
Sbjct: 427 SELAAEEFPELDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSQSLEA 486

Query: 486 IVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRLGPK 545
           +VEDCVN VGVD+N AS  LLT+VAGL+  LA+NIV+YRD+NG+F SR  L KVPRLGPK
Sbjct: 487 VVEDCVNGVGVDLNMASMPLLTQVAGLNKTLARNIVEYRDQNGQFTSRKQLLKVPRLGPK 546

Query: 546 AFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRAVDY 605
           AFEQ AGFLRI +G NPLDASAVHPE Y +V++IA+   + + ALIGNT+ L+ + A  +
Sbjct: 547 AFEQAAGFLRIREGDNPLDASAVHPETYALVESIAKAQQQAVDALIGNTDLLKQIDAKAF 606

Query: 606 TDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVANFG 665
             E FG+PT+ DI+ ELDKPGRDPR EFKTA F EG+ E+ DL+V M+LEGVV+NV NFG
Sbjct: 607 VTEEFGLPTIEDILSELDKPGRDPRGEFKTAVFKEGVEEIKDLKVEMILEGVVTNVTNFG 666

Query: 666 AFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLNDEP 725
           AFVDIGVHQDGLVHIS+LTD+F+SDP  VVKAGD+VKVKVMEVD +RKRI+L+MRL+++P
Sbjct: 667 AFVDIGVHQDGLVHISSLTDKFVSDPHTVVKAGDVVKVKVMEVDAERKRISLTMRLDEKP 726

Query: 726 G------QDNRSQRSAAPRSGQERRAPR-RDEPQGN------ALGGAMGGAFAAAFAKAK 772
           G      Q  + Q  A    G + ++P+ + + +G           AMG AFA AFAK K
Sbjct: 727 GEKQMSHQGGKGQAKAGQGKGHQGKSPQGKSQAKGQYKQPKAPANAAMGNAFADAFAKLK 786

Query: 773 K 773
           K
Sbjct: 787 K 787