Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., transcriptional accessory protein from Dechlorosoma suillum PS

 Score =  942 bits (2434), Expect = 0.0
 Identities = 487/778 (62%), Positives = 595/778 (76%), Gaps = 12/778 (1%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M   I H+IA+EL  RP+QV+AAV L+D+G TVPFIARYRKEVTGGLDDTQLRNL+ RL 
Sbjct: 1   MLPPIEHRIAEELGARPQQVMAAVALLDEGATVPFIARYRKEVTGGLDDTQLRNLEERLT 60

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE++DRR  +L SI EQGKLTPEL+ A+  AD+K RLEDLYLPYK KRRTK QIA EA
Sbjct: 61  YLRELEDRRAAVLASIDEQGKLTPELKAAVDMADTKQRLEDLYLPYKQKRRTKAQIAREA 120

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GL+PLAD L   P   PESEA KY NAE G AD+KA LDGAR I+ME+ AEDA LL  +R
Sbjct: 121 GLQPLADALLADPTLVPESEAEKYFNAEAGFADTKAVLDGARQILMEQFAEDAELLGSLR 180

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L+ +  + S +I G+E+AG KF+DYF++ E IS  PSHRALA+ RGRNEG ++L L  
Sbjct: 181 TYLDEHGILKSTLIAGQEEAGAKFRDYFEYSEAISDIPSHRALALFRGRNEGAISLALVL 240

Query: 241 DPELEESARQ---SYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSA 297
           D EL+E  +    + CE  IA+ +GI      AD W    + WAW++K+++H+ETELM+ 
Sbjct: 241 DSELDEENKPLGPNPCELRIAKRFGIKDQGRPADKWLADTVRWAWRVKMALHLETELMTV 300

Query: 298 MKERAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIY 357
           ++E+AE EAI VF  NLKDLL+AAPAG +AT+GLDPGLRTG KVAVVD TGK+L T TIY
Sbjct: 301 LREKAEEEAIRVFGRNLKDLLLAAPAGQKATMGLDPGLRTGVKVAVVDQTGKLLDTATIY 360

Query: 358 PHAPQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGN--LKVQKIMV 415
           PH P+  ++ ++ ++A+L +K NV+LIAIGNGTASRETD  AADLI+  +  + + K++V
Sbjct: 361 PHEPRRDWEGSLHTLAVLAQKHNVNLIAIGNGTASRETDKLAADLIRIASPHMALAKVVV 420

Query: 416 SEAGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVS 475
           SEAGASVYSASE AA+EFP LDVSLRGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDVS
Sbjct: 421 SEAGASVYSASEFAAREFPELDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS 480

Query: 476 QTLLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSA 535
           QT LA+ LD +VEDCVNAVGVDVNTAS  LL R++GL+  LA NIV YRD++G F +R A
Sbjct: 481 QTKLARALDGVVEDCVNAVGVDVNTASIPLLARISGLNQTLAANIVAYRDQHGPFPNRLA 540

Query: 536 LKKVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTE 595
           LK VPRLG K FEQ AGFLR+    NPLDASAVHPEAYPVV+ I     K +K +IG+  
Sbjct: 541 LKNVPRLGDKTFEQAAGFLRVPSSDNPLDASAVHPEAYPVVERILADIKKGIKEVIGDAR 600

Query: 596 FLRTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLE 655
            +++L+ V YTDE FG+PTV DI+KEL+KPGRDPRPEFKTA F +G+ E+ DL+ GM+LE
Sbjct: 601 LVKSLQPVKYTDEKFGLPTVQDILKELEKPGRDPRPEFKTAVFKDGVEEMRDLQPGMILE 660

Query: 656 GVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRI 715
           GVV+NVA FGAFVDIGVHQDGLVH+SAL+ +F+ DP EVVKAGDIVKVKV+EVD+ RKRI
Sbjct: 661 GVVTNVAAFGAFVDIGVHQDGLVHVSALSTKFVKDPHEVVKAGDIVKVKVLEVDMARKRI 720

Query: 716 ALSMRLNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAFAAAFAKAKK 773
           AL+MRL+D  G+     + A      + R     +P G         A AAAFAK K+
Sbjct: 721 ALTMRLDDAFGKSTGGGKPAGAPMTAKARQREDAQPAGQ-------NAMAAAFAKLKR 771