Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 756 a.a., RNA binding S1 domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  621 bits (1602), Expect = 0.0
 Identities = 347/726 (47%), Positives = 467/726 (64%), Gaps = 16/726 (2%)

Query: 9   IAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLREMDDR 68
           +A  L++    V A + L+D+G T+PFIARYRKE TG LD+ Q+  +   L   RE+D R
Sbjct: 36  LAAALSLPVSGVSAVMALLDEGATIPFIARYRKEATGSLDEVQVVAVRDALEKARELDKR 95

Query: 69  RQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEPLADT 128
           R  +L S++E+G LTP+L  A+  A +   LED+YLPY+PKR T+ + A   GL PLA+ 
Sbjct: 96  RAAVLASLEERGLLTPQLAGAVAGASTLTALEDVYLPYRPKRVTRAEKARRRGLAPLAEA 155

Query: 129 LWT-QPNTDPESEAAKYINA---------EKGVADSKAALDGARAIVMERIAEDANLLEK 178
           L T +P  D  + AA ++ +         E  V D +AAL GAR I+ E  AE A L   
Sbjct: 156 LRTARPTADALALAAPHVTSHATPEGADPELAVPDVQAALAGARDILAENCAESAPLRGA 215

Query: 179 IRQHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTL 238
           +R    R A + +R + GKE  G  + D+F H E  +  PSHR LAMLRG  EGFL++++
Sbjct: 216 LRDLFVRRAVLRARAVPGKEAEGATYADWFGHEERAAAMPSHRLLAMLRGEREGFLSVSV 275

Query: 239 NADPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAM 298
              P+  E+    +    IA   G      TA    +  ++ AWK  ++  +E EL +A+
Sbjct: 276 R--PDDAEALDTLHRRAGIAAP-GTAPRPETAAGQVEAALADAWKRLLAPSLENELRTAL 332

Query: 299 KERAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYP 358
           +ERAE +AI VFA NL++L+MA P G R  L LDPG RTG K+  +DA G +L  + I+P
Sbjct: 333 RERAEAQAIGVFAANLRELIMAPPLGGRRVLALDPGWRTGSKLVCLDAQGTLLHHEVIHP 392

Query: 359 HAPQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGNLKVQKIMVSEA 418
                  +RA +++     ++ ++++A+GNGTA RET+AF  +      + V  ++V+E 
Sbjct: 393 LTGDAGAERAARTLRDCCARYAMEVVAVGNGTAGRETEAFVRNAGLPAGVDV--VLVNET 450

Query: 419 GASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTL 478
           GASVYSASE+A +EFP+ D+++RGAVSI RRL DPLAELVKIDP+S+GVGQYQHDV Q  
Sbjct: 451 GASVYSASEVARREFPDHDLTVRGAVSIGRRLMDPLAELVKIDPRSLGVGQYQHDVDQAA 510

Query: 479 LAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKK 538
           L + LD +V  CVNAVGVD NTAS  LL  V+G+   LA+NIV +R ENG F +R  L K
Sbjct: 511 LRRSLDEVVASCVNAVGVDANTASPELLAHVSGIGPVLARNIVAHRAENGPFRNRRDLLK 570

Query: 539 VPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLR 598
           VPRLGPKAFEQ AGFLR+  G NPLDASAVHPE Y +V  +A      L  L+   +  R
Sbjct: 571 VPRLGPKAFEQAAGFLRVR-GDNPLDASAVHPERYALVARMAADLGCALADLLRRDDLRR 629

Query: 599 TLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVV 658
            +R   Y  +  G+PT+TDI+ EL +PGRDPRP F    FAEG+H   DLE GMVL G+V
Sbjct: 630 RIRPEQYVADGVGLPTLTDILAELARPGRDPRPSFAPFRFAEGVHSPDDLEPGMVLPGIV 689

Query: 659 SNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALS 718
           +NV  FGAFVDIGVH+DGLVH+S L+DRF+ DP EVV  G  V+V+V+EVD  R R++L+
Sbjct: 690 TNVTAFGAFVDIGVHRDGLVHVSQLSDRFVRDPAEVVAPGRTVRVRVLEVDRARGRVSLT 749

Query: 719 MRLNDE 724
           M+  D+
Sbjct: 750 MKGVDQ 755