Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., transcription accessory protein from Klebsiella michiganensis M5al

 Score = 1026 bits (2652), Expect = 0.0
 Identities = 527/777 (67%), Positives = 627/777 (80%), Gaps = 7/777 (0%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+ ++C  IA EL  R EQV AAV L+D+GNTVPFIARYRKEVTGGLDDTQLRNL++RL 
Sbjct: 2   MNDSLCRIIAGELQARAEQVEAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRNLETRLG 61

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE++DRRQ ILKSI EQGKLT  LE+AI    SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 62  YLRELEDRRQAILKSIGEQGKLTEALEKAINGTLSKTELEDLYLPYKPKRRTRGQIAIEA 121

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLA+ LW +P+ DPE+EAAKYI+A+KGVADSKAALDGAR I+MER AEDA LL K+R
Sbjct: 122 GLEPLAELLWNEPSHDPETEAAKYIDADKGVADSKAALDGARYILMERFAEDAALLAKVR 181

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA +V+ V+ GKE+ G KF+DYFDH EPI+  PSHRALAM RGRNEG L L+LNA
Sbjct: 182 DYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIATVPSHRALAMFRGRNEGVLQLSLNA 241

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++S+ E +I +H G+ L+ A AD+WRK V+SW W+IK+ MH+ETELM  ++E
Sbjct: 242 DPQFDEPPKESHGEQIIIDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRE 301

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           RAE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVD TGK++ATDTIYPH 
Sbjct: 302 RAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHT 361

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A  ++A L +K+NV+L+AIGNGTASRET+ F  D+ K+   +  QK++VSEAG
Sbjct: 362 GQAA--KAAVAVAALCEKYNVELVAIGNGTASRETERFFLDVQKQFPKVTAQKVIVSEAG 419

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA EFP+LDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT L
Sbjct: 420 ASVYSASELAALEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQL 479

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           A++LDA+VEDCVNAVGVD+NTAS  LLTRVAGL+  +AQNIV +RDENG+F++R  L KV
Sbjct: 480 ARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVSWRDENGQFQNRQQLLKV 539

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPEAYPVV+ I     + LK L+GN+  LR 
Sbjct: 540 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRN 599

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+AVD+TD+ FGVPTVTDIIKEL+KPGRDPRPEFKTA FA+G+  ++DL  GM+LEG V+
Sbjct: 600 LKAVDFTDDKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVT 659

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L+++F+ DP  VVKAGDIVKVKVMEVD+ RKRIAL+M
Sbjct: 660 NVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVMEVDLPRKRIALTM 719

Query: 720 RLNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGN----ALGGAMGGAFAAAFAKAK 772
           RL+++PG  N  +     R    R A +  +P+G     A   AM  A AAA  K +
Sbjct: 720 RLDEQPGDSNARRGGGNDRPQGNRPAAKAAKPRGREAQPAGNSAMMDALAAAMGKKR 776