Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., uncharacterized protein from Paraburkholderia bryophila 376MFSha3.1

 Score =  915 bits (2365), Expect = 0.0
 Identities = 488/781 (62%), Positives = 586/781 (75%), Gaps = 20/781 (2%)

Query: 5   ICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLRE 64
           I  +IA EL+V+P QV AAV L+D+G TVPFIARYRKEVT  LDDTQLRNL+ RL YLRE
Sbjct: 9   IVQRIAAELSVQPRQVAAAVQLLDEGATVPFIARYRKEVTDNLDDTQLRNLEERLLYLRE 68

Query: 65  MDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEP 124
           ++DRR  I+ SI EQGKLT EL  AI  ADSK  LEDLYLPYKPKRRT+ QIA EAGL+P
Sbjct: 69  LEDRRAAIVASIDEQGKLTDELRNAIEGADSKQVLEDLYLPYKPKRRTRAQIAREAGLQP 128

Query: 125 LADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLN 184
           LAD L   P  DP++EA  Y++AEKGVAD KAALDGAR I+ E+  E A+LL K+R +L 
Sbjct: 129 LADALLGNPLLDPQTEATAYVDAEKGVADVKAALDGARDILSEQFGETADLLGKLRDYLF 188

Query: 185 RNAEIVSRVIEGKEQAGE-KFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
               + S+V+EGKE A E KF+DY+D+ E I   PSHRALA+ RGRN G L + L    E
Sbjct: 189 NQGVVSSKVVEGKETAEEEKFRDYYDYAETIRTVPSHRALALFRGRNAGVLMIKLGLGEE 248

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
           L+        E LIA H+GI      AD W   V  W W++K+  H+E EL++ +++ AE
Sbjct: 249 LDAQVPHPG-EALIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLTNLRDEAE 307

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VFA NLKDLL+AAPAGP+A +GLDPG+RTG KVAVVD TGKVL TD IYPH P+ 
Sbjct: 308 HEAIRVFARNLKDLLLAAPAGPKAVIGLDPGMRTGVKVAVVDRTGKVLVTDVIYPHEPRR 367

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRG-NLKVQKIMVSEAGASV 422
            +D ++  +A +  +   +LI+IGNGTASRETD  A++LI R    K+QKI+VSEAGASV
Sbjct: 368 DWDGSIAKLARICAQTQAELISIGNGTASRETDKLASELIARHPEFKLQKIVVSEAGASV 427

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELAAKEFP++DVSLRGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDV+Q  LA+ 
Sbjct: 428 YSASELAAKEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQRELARS 487

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVD NTAS ALL RV+GL+A LA+NIVDYRD NG F SR  L+KVPRL
Sbjct: 488 LDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSRDHLRKVPRL 547

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G K FEQ AGFLRI +G+NPLD S+VHPEAYPVV+ I  K +K +  ++GN + LR L  
Sbjct: 548 GDKTFEQAAGFLRINNGENPLDRSSVHPEAYPVVERILAKINKHVGEVLGNRDALRGLSP 607

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
            ++ DE FG+PTV DI+ EL+KPGRDPRPEFKTATF EG+ +VSDL  GMVLEGVV+NVA
Sbjct: 608 GEFVDERFGLPTVRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVA 667

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
            FGAFVDIGVHQDGLVH+SA++ +FI DP EVVKAG IVKVKV+EVDV+R+RIAL+MRL+
Sbjct: 668 AFGAFVDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVKRQRIALTMRLD 727

Query: 723 DEPGQDNRSQRSAAPRSGQERRAPRRD--EPQGNALGGAM--------GGAFAAAFAKAK 772
           DE G       +AA RSG   +  R +     GN  G +         GGA AAAFAK K
Sbjct: 728 DEFG-------AAAARSGGGAQQDRGNFGRSGGNGRGASQQRSREPEAGGAMAAAFAKLK 780

Query: 773 K 773
           +
Sbjct: 781 Q 781