Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., RNA-binding protein from Burkholderia phytofirmans PsJN

 Score =  918 bits (2372), Expect = 0.0
 Identities = 484/781 (61%), Positives = 585/781 (74%), Gaps = 20/781 (2%)

Query: 5   ICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLRE 64
           I  +IA EL+V+P QV AAV L+D+G TVPFIARYRKEVT  LDDTQLRNL+ RL YLRE
Sbjct: 9   IVQRIAAELSVQPRQVAAAVQLLDEGATVPFIARYRKEVTDNLDDTQLRNLEERLLYLRE 68

Query: 65  MDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEP 124
           ++DRR  I+ SI EQGKLT EL  AI  ADSK  LEDLYLPYKPKRRT+ QIA EAGL+P
Sbjct: 69  LEDRRAAIIASIDEQGKLTDELRTAIEGADSKQVLEDLYLPYKPKRRTRAQIAREAGLQP 128

Query: 125 LADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLN 184
           LAD L   P  DP++EAA Y++AEKGVAD KAALDGAR I+ E+  E A LL K+R +L 
Sbjct: 129 LADALLANPLLDPQTEAAAYVDAEKGVADLKAALDGARDILSEQFGETAELLGKLRDYLF 188

Query: 185 RNAEIVSRVIEGKEQAGE-KFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
               + S+V+EGKE A E KF+DY+D+ E I   PSHRALA+ RGRN G L + L    E
Sbjct: 189 NQGVVSSKVVEGKENAEEEKFRDYYDYSETIRTVPSHRALALFRGRNAGVLMVKLGLGEE 248

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
           L+        E LIA H+GI      AD W   V  W W++K+  H+E EL++ +++ AE
Sbjct: 249 LDAQVPHPG-EALIARHFGIANQNRPADKWLSDVCRWCWRVKVQPHIENELLTNLRDEAE 307

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VFA NLKDLL+AAPAGP+A +GLDPG+RTG KVAVVD TGKVLATD IYPH P+ 
Sbjct: 308 HEAIRVFARNLKDLLLAAPAGPKAVIGLDPGMRTGVKVAVVDRTGKVLATDVIYPHEPRR 367

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRG-NLKVQKIMVSEAGASV 422
            +D ++  +A +  +   +LI+IGNGTASRETD  A++LI R    K+QKI+VSEAGASV
Sbjct: 368 DWDGSIAKLARICAQTQAELISIGNGTASRETDKLASELIARHPEFKLQKIVVSEAGASV 427

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELAAKEFP++DVSLRGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDV+Q  LA+ 
Sbjct: 428 YSASELAAKEFPDMDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQRELARS 487

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVD NTAS ALL RV+GL+A LA+NIVDYRD NG F SR  L+KVPRL
Sbjct: 488 LDAVVEDCVNAVGVDANTASVALLARVSGLNATLARNIVDYRDANGPFPSREHLRKVPRL 547

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G K FEQ AGFLRI +G+NPLD S+VHPEAYPVV+ +  K SK +  ++GN + LR L  
Sbjct: 548 GDKTFEQAAGFLRINNGENPLDRSSVHPEAYPVVERMLAKISKHVGEVLGNRDALRGLSP 607

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
            ++ D+ FG+PTV DI+ EL+KPGRDPRPEFKTATF EG+ +VSDL  GMVLEGVV+NVA
Sbjct: 608 AEFVDDRFGLPTVRDILLELEKPGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVA 667

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
            FGAF+DIGVHQDGLVH+SA++ +FI DP EVVKAG IVKVKV+EVDV+R+RIAL+MR++
Sbjct: 668 AFGAFIDIGVHQDGLVHVSAMSTKFIKDPHEVVKAGQIVKVKVLEVDVKRQRIALTMRMD 727

Query: 723 DEPG----------QDNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAFAAAFAKAK 772
           DE G          Q +R     +   G+  +  R  EP+        GGA AAAFAK K
Sbjct: 728 DEVGVAAARSGGGAQQDRGGSGRSGGGGRGAQQQRSREPEA-------GGAMAAAFAKLK 780

Query: 773 K 773
           +
Sbjct: 781 Q 781