Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 779 a.a., RNA-binding S1 domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  973 bits (2514), Expect = 0.0
 Identities = 498/779 (63%), Positives = 612/779 (78%), Gaps = 9/779 (1%)

Query: 3   KAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYL 62
           + I   IAQELNV+  QV A + L+D+G TVPF+ARYRKE TGGLDDTQLR L +RL YL
Sbjct: 2   QTIAQIIAQELNVQEHQVTATIDLLDNGATVPFVARYRKEATGGLDDTQLRTLHTRLGYL 61

Query: 63  REMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGL 122
           RE++DRRQ IL SIQ QGKLTPEL++ I  ADSK RLEDLYLP+KPKRRTKGQIAIEAGL
Sbjct: 62  RELNDRRQVILSSIQTQGKLTPELQREIEGADSKTRLEDLYLPFKPKRRTKGQIAIEAGL 121

Query: 123 EPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQH 182
           EPL + +      D E+ AA Y+N E G AD+KA L+GAR I+MER AEDA LL K+R H
Sbjct: 122 EPLVEAVLADRKADIEALAAGYLNLEAGFADTKAVLEGARYILMERYAEDAELLRKVRDH 181

Query: 183 LNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADP 242
           L++N+ + SRVI GKE+ G KF+DYF+H EP++K PSHRALAMLRGRNEGFL+L++NADP
Sbjct: 182 LSQNSVLESRVIAGKEKEGAKFRDYFEHNEPLAKVPSHRALAMLRGRNEGFLSLSMNADP 241

Query: 243 ELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERA 302
             E + + SYCE +I+EH G+ L +++ D W K V++  W+IKI++ METE +S M+ERA
Sbjct: 242 AAE-AGQGSYCEVIISEHLGLKLGESSVDQWLKTVVTATWRIKIALQMETEFISQMRERA 300

Query: 303 EIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQ 362
           E EAI+VFA NL DLLMAAPAG +AT+GLDPGLRTG KVA+VD TGK++A  TI+PHAPQ
Sbjct: 301 EAEAIKVFARNLGDLLMAAPAGAKATMGLDPGLRTGVKVAIVDNTGKLVAHTTIFPHAPQ 360

Query: 363 HQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLI---KRGNLKVQKIMVSEAG 419
           + +D++++++A L +   V+LIAIGNGTASRETD  A +LI   K    ++ K+MVSEAG
Sbjct: 361 NLWDKSIRTLANLAQMHKVELIAIGNGTASRETDKLAGELIASLKDSQPQLTKVMVSEAG 420

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA EFP LDVS+RGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDVSQ+ L
Sbjct: 421 ASVYSASELAALEFPELDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQL 480

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           +  L+A+VEDCVN VGVD+N AS  LL++VAGL+  LA+N+VDYRD NG F++R  L KV
Sbjct: 481 SSSLEAVVEDCVNGVGVDLNMASVPLLSQVAGLNKTLAKNVVDYRDANGAFKNRKELLKV 540

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
           PRLGPKAFEQ AGFLRI DG NPLD SAVHPEAY +V+TIA+    +L +LIGN+E LR 
Sbjct: 541 PRLGPKAFEQAAGFLRIRDGDNPLDMSAVHPEAYALVETIAKTKQVELASLIGNSELLRN 600

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           ++  ++T   FG+PTVTDI+ ELDKPGRDPR EFKTA F +G+ E+ DL+  M+LEGVV+
Sbjct: 601 IKPQEFTTPEFGLPTVTDILSELDKPGRDPRGEFKTAKFKDGVEELKDLKPEMILEGVVT 660

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+LTD+FI+DP  VVKAGD+VKVKVMEVDV+R+RI LSM
Sbjct: 661 NVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVKVMEVDVERRRIGLSM 720

Query: 720 RLN---DEPGQDNRSQRSAAPRS--GQERRAPRRDEPQGNALGGAMGGAFAAAFAKAKK 773
           RL+   D+    +R      P++  G  +    R  P+   +  AMG AFA AFAK KK
Sbjct: 721 RLDEAIDQSKSQSRGPSQGKPQAHKGNAQHKSARPAPKAAPVNAAMGNAFADAFAKLKK 779