Pairwise Alignments

Query, 161 a.a., transcription elongation factor GreB from Vibrio cholerae E7946 ATCC 55056

Subject, 158 a.a., transcription elongation factor GreA (RefSeq) from Shewanella loihica PV-4

 Score = 89.4 bits (220), Expect = 3e-23
 Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 6   ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
           +T  G N+L++ELD+L  E+RP+I + +  A  LGD  ENA+Y   +      + RVR +
Sbjct: 6   MTVVGANQLREELDFLKFEKRPKIAEAIGIARELGDLKENAEYHAAREEQGLCEARVRDI 65

Query: 66  SKLLPELKIVDYSPQQE-GKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAK-DYISID 122
              L   +I+D +  +  G+V FG  V I N ++ E   +RIVG +E   D K + IS+ 
Sbjct: 66  EGKLSHAQIIDVTKMENTGRVIFGTTVTILNLDSDEEFTYRIVGEDE--ADIKANLISVT 123

Query: 123 SPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156
           SP+AR L+ K   +E  + TP G+ ++ I ++EY
Sbjct: 124 SPIARGLVGKSEGDEVSIQTPGGMTDYEITAVEY 157