Pairwise Alignments

Query, 240 a.a., two-component system response regulator OmpR from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  192 bits (488), Expect = 5e-54
 Identities = 104/228 (45%), Positives = 147/228 (64%), Gaps = 7/228 (3%)

Query: 7   VLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLSI 66
           +L+VDDD  +R LL+ YLS  GFQVR V +G +    L  E   L++LD+MLP EDG S+
Sbjct: 8   ILLVDDDQEIRELLQTYLSRSGFQVRGVPDGGEFRAALCAEPADLVILDVMLPDEDGFSL 67

Query: 67  CRRLRNSNNM--IPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQV 124
           CR +R    +  +PI+MLTA  DE DR++GLE+GADDYL KPF+PRELLARIKA+LRR  
Sbjct: 68  CRWIRQHERLASMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR-- 125

Query: 125 IEAPGAPSAEETIIEFGEFRLNLGTREMFRGE-EAMPLTSGEFAVLKALVTNAREPLSRD 183
                A      ++ F E+RL++ +  +F  + E + L+  +FA+LK  + + ++ L RD
Sbjct: 126 --VSFAQERGSDVLAFDEWRLDMISHRLFHADGEEVFLSGADFALLKLFLDHPQQILDRD 183

Query: 184 KLMNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYV 231
            + N  RGRE   +ER +D+ +SRLR+ L      PR I+TV G GY+
Sbjct: 184 TIANATRGREVMPLERIVDMAVSRLRQRLRDTGKSPRLIRTVRGSGYL 231