Pairwise Alignments

Query, 438 a.a., two-component system sensor histidine kinase EnvZ from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  135 bits (339), Expect = 3e-36
 Identities = 120/454 (26%), Positives = 216/454 (47%), Gaps = 42/454 (9%)

Query: 13  LFFSLLIASQIYSYYAVFNYALLPSLQQ----------FNKILAHEISLMLDDTSNPNVS 62
           LF  LL+   + S   +    LLP LQQ            K+LA  I+  + +      S
Sbjct: 5   LFIKLLLGFWLCSSLIIALVGLLPLLQQNHDRAPIPPHLQKVLA-TIAQRIQENPTLLKS 63

Query: 63  SEMDALLKRRVLEQLGVTIHSNDSPEAVEYQHAISLD-----LMSEEMSSELGSPTEVRM 117
             +    + R +E   + ++  +S   V   + IS       LM++E    +    +  +
Sbjct: 64  DFLRRWERHRDMEGKPLRLYLTNSQGQVINTNRISRGVRSFMLMADEEKQPISHQFKDEL 123

Query: 118 ALGEESYILWMKIDSLPGQLLRIPLSELQEEDFAPLFRNSIIMALLIVIGGWLFIRLQ-- 175
             G   + L  +   L G   R+P +  +   F  +    + ++L I++ G L   L   
Sbjct: 124 VFGPYQFTLEGETYFLYG---RLPDTHPRPWFFFFIENKLLTLSLAILLSGLLCALLAWH 180

Query: 176 -NRPLIALEKAAKMVGRGETPPHLPEQGTL---EIRSVTRAFNRMSKGIQALEEDRALLM 231
             +PL +L+K+A  +  G+    + +  T    EI  +  AFN M+  I+A+ +++  LM
Sbjct: 181 LGKPLRSLKKSADALAEGDLSNRVDKTTTQRNDEIGQLATAFNSMADSIEAMVKNQQRLM 240

Query: 232 AGISHDIRTPLTRIRLATEMMSPEDSYLAES--IISDTEECNQIISQFMDY--LKPVNRE 287
             ISH++RTPLTR++L+  +   +     E+  I  + E+  Q+I++ ++   +K    E
Sbjct: 241 GDISHELRTPLTRLQLSLALARKKGQQTTETDRIAYEAEQLEQLIAELLELSRVKLSTNE 300

Query: 288 AFEAVDLNDIASDVA------SSEGGYEVQIETELQAGLAPALGNPIAIKRSLSNLVVNA 341
               + L +  S V       + + G ++ I+ +    L+     P ++ R++ NL+ NA
Sbjct: 301 TKVCLGLAESLSQVLDDAEFEADQQGKKITIDIDEAIELSHY---PKSLSRAIENLLRNA 357

Query: 342 LRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSE--GTGL 399
           +RY    + + +  T+ +  V ++++D+GPGIDP+++  +F+PF R D+AR  E  G GL
Sbjct: 358 IRYAKSDIHLHASQTSGQ--VQITIKDDGPGIDPAELESIFKPFYRPDSARQRESGGWGL 415

Query: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFPT 433
           GLAI +  +S H G +   NR   GL   IS PT
Sbjct: 416 GLAITEAAISAHKGKIKAENREPHGLEVNISLPT 449