Pairwise Alignments

Query, 692 a.a., DNA helicase RecG from Vibrio cholerae E7946 ATCC 55056

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score =  261 bits (667), Expect = 1e-73
 Identities = 162/431 (37%), Positives = 241/431 (55%), Gaps = 28/431 (6%)

Query: 219 AQIRLIMEELLAQNLSMLAIRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAE 278
           A+ R  + ++    L + A RSQ Q+  A P  P    +Q+L    P+ PT  Q + V  
Sbjct: 559 AKARKAVRKVAVDLLKLYAQRSQ-QEGHAYP--PDQPWQQELEESFPYQPTADQLKAVEA 615

Query: 279 IEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQ 338
           ++ D+  P PM RLV GDVG GKT VA  A  +A+  G QVAL+APT +L +QH     +
Sbjct: 616 VKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHTLKE 675

Query: 339 WLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQ 398
              P  IQ+G L        R+    R+A+GE+ +VVGTH L  +   F  L L+++DE+
Sbjct: 676 RFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGTHQLLSKGTQFRDLGLLVVDEE 735

Query: 399 HRFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQ 458
            RFGV+Q+ +++    +       L ++ATPIPRTL M      E S+I   PP R PI+
Sbjct: 736 QRFGVNQKEKIKALKTQVDV----LTLSATPIPRTLYMALSGVREMSLITTPPPSRRPIK 791

Query: 459 TVAIPDTKRDEIVERIRHAC---LNEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLP 515
           T  +P       +E +R A    ++ G Q ++V   ++  E +        A  LQ  LP
Sbjct: 792 THLMPYD-----LEAVRTAISQEIDRGGQVFYVVPRVEGIEAI--------ATRLQEMLP 838

Query: 516 EVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPNASLMIIENPERLGLA 575
            ++I + HG+M   E +A M AF NNE  +++ TT+IE G+D+P  + ++IE+ +R GL+
Sbjct: 839 SLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQRFGLS 898

Query: 576 QLHQLRGRVGRGTVASHCVLLF--HAPLSKTAQKRLGVLRE---SNDGFVIAQRDLEIRG 630
           QL+QLRGRVGR  + +H  L +     LS  A++RL  ++E      G+ +A RDLEIRG
Sbjct: 899 QLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDLEIRG 958

Query: 631 PGELLGTKQTG 641
            G LLG +Q+G
Sbjct: 959 VGNLLGVEQSG 969