Pairwise Alignments

Query, 567 a.a., cation acetate symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., sodium/proline symporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  109 bits (273), Expect = 2e-28
 Identities = 120/524 (22%), Positives = 209/524 (39%), Gaps = 132/524 (25%)

Query: 1   MDIQTWTFILVGITFALYIGIAIWA-RAGSTSEFYVAGG-----GVHPVANGMATAADWM 54
           M I T   +      AL +GI  WA +A  + + Y+ GG     GV  ++ G +  + W+
Sbjct: 1   MSIDTPILVTFVGYLALMMGIGFWAYKATDSVDDYILGGRKMGPGVTALSVGASDMSGWL 60

Query: 55  SAASFISMAGIISFIGYDGTVYLMG----WTG-GYVLLA----LCLAPYLRKFGKF---- 101
                         +G  G VYL G    W G G V+ A    L +A  LR + +     
Sbjct: 61  -------------LLGLPGAVYLGGLGEAWIGIGLVIGAWLNWLFVAKRLRIYTQLADNA 107

Query: 102 -TVPDFIGDRYYSRTA--RMVAVFCAIFISFTYVAGQMRGVGVVFARFLEVDINVGIVIG 158
            T+PDF   R++ +    R V+    +     Y +  M G  ++F +   +D    +VIG
Sbjct: 108 LTLPDFFEKRFHDKAGLLRFVSALTILVFFTFYASSGMVGGAILFEKVFGLDYTAALVIG 167

Query: 159 MAIVFFYAVMGGMKGITYTQVAQYCVLIFAFLV--PAIFTSL-------MMTGNPIPQIG 209
            AI+  Y  +GG   +++T   Q C+++ A L+   AIFT+         ++   +  IG
Sbjct: 168 SAIIVGYTFVGGFFAVSWTDFFQGCLMLIALLIVPMAIFTNSESHASIDTLSPEMLSLIG 227

Query: 210 FGSTLTGTDDYLLNKLDGLAVELGFTAYTDGSKSMVDVFFICAALMVGTAGLPHVIIRFF 269
            G+TL G    +                               A  +G  G PH++ RF 
Sbjct: 228 EGTTLMGVASLM-------------------------------AWGLGYFGQPHILSRFM 256

Query: 270 TVPKVS----DARVSAGWALVFIAFLYTTAPAVAAFARVNMIDTINGPDMQGVTAAEAPT 325
            + +        R++  W +V                            + G  A     
Sbjct: 257 AIERPEHLPVSRRIAMSWMIV---------------------------SLMGALA----- 284

Query: 326 WYRNWESTGLVKWEDKNGDGRMFYSGDARNEMTINNDIIVLASPEIAKLPNWVVALLAAG 385
                  TGL         G ++++     E   N + + +   ++A  P W+  LL A 
Sbjct: 285 -------TGLA--------GSLYFA----KEPLANAETVFIHLAQVAFNP-WIAGLLIAA 324

Query: 386 GLAAALSTAAGLLLVISTAISHDLLKKGFKPDMTDKQELLAARIAAALAIVGAGYLGINP 445
            L+A +ST    LLV S+ ++ D  +K  +P   D + +   RI      + AG + ++P
Sbjct: 325 ILSAIMSTIDSQLLVCSSVVTEDFYRK-LRPKADDNELMRVGRIGVLAIAIIAGVVALDP 383

Query: 446 PGFVAQVVAFAFGLAAASFFPAIILGIFYKKMNKEGAIIGMLAG 489
              V  +V++A+    A+F P ++L +F++  +K GA+  ++ G
Sbjct: 384 QSSVLGLVSYAWAGFGAAFGPVVLLSLFWRGYSKTGALATIITG 427