Pairwise Alignments

Query, 567 a.a., cation acetate symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., sodium/proline symporter (RefSeq) from Shewanella amazonensis SB2B

 Score =  108 bits (269), Expect = 6e-28
 Identities = 111/496 (22%), Positives = 195/496 (39%), Gaps = 81/496 (16%)

Query: 7   TFILVGITFALYIGIAIWARAGSTSEF--YVAGGG-VHPVANGMATAADWMSAASFISMA 63
           ++I + + F   + I ++A   ST +   Y+ GG  V P    ++  A  MS    + + 
Sbjct: 5   SYISLALYFIAMLAIGLFAYRNSTDDLAGYMLGGRQVSPHVTALSAGASDMSGWMLMGLP 64

Query: 64  GIISFIGYDGTVYLMGWTGGYVLLALCLAPYLRKFGK-----FTVPDFIGDRYYSRTARM 118
           G +  +GYD      G   G +L  L +AP LR F +      T+PDF   R+      +
Sbjct: 65  GAMFTMGYDALWIAAGLLLGALLNYLLVAPRLRVFTEAADDALTLPDFFSKRFNKDNGSV 124

Query: 119 VAVFCAIFISF--TYVAGQMRGVGVVFARFLEVDINVGIVIGMAIVFFYAVMGGMKGITY 176
             +  A+ I F   Y +  +   G  F     +    G+++ +++V  Y ++GG   ++ 
Sbjct: 125 RMISAAVIILFFTLYTSAGLVAGGKFFESAFGLGYQTGLLLTVSVVVAYTLLGGFLAVSL 184

Query: 177 TQVAQYCVLIFAFLVPAIFTSLMMTGNPIPQIGFGSTLTGTDDYLLNKLDGLAVELGFTA 236
           T   Q C++  A ++             +P +      + TD                T 
Sbjct: 185 TDFVQGCIMFLALVL-------------VPLVALQEFNSSTDMLA-------QASRSITP 224

Query: 237 YTDGSKSMVDVFFICA-ALMVGTAGLPHVIIRFFTVPKVSDARV--SAGWALVFIAFLYT 293
             D  + M  +  + + A  +G  G PH+I+RF  +  V D  V  + G + + +  L  
Sbjct: 225 LADSFEHMGILAIVSSLAWGLGYFGQPHIIVRFMAIRSVKDIAVARNIGMSWMLVTILGA 284

Query: 294 TAPAVAAFARVNMIDTINGPDMQGVTAAEAPTWYRNWESTGLVKWEDKNGDGRMFYSGDA 353
            A  +   A VN                               K++    DG        
Sbjct: 285 LATGLIGVAYVN-------------------------------KFKPGLDDG-------- 305

Query: 354 RNEMTINNDIIVLASPEIAKLPNWVVALLAAGGLAAALSTAAGLLLVISTAISHDLLKKG 413
                   + I +   EI   P  +   L A  LAA +ST +  LLV S+++S D+ +  
Sbjct: 306 --------ETIFILFAEILFHP-LISGFLLAAILAAIMSTISSQLLVSSSSLSEDVYRAL 356

Query: 414 FKPDMTDKQELLAARIAAALAIVGAGYLGINPPGFVAQVVAFAFGLAAASFFPAIILGIF 473
           F  +M  K  + A RI        A  L ++    +  +V+ A+    A+F P ++L +F
Sbjct: 357 FHKEMDQKATVTAGRIGVLAVAAVATLLALDNNASILSLVSNAWAGFGAAFGPLVLLSLF 416

Query: 474 YKKMNKEGAIIGMLAG 489
           + +M   GA+ G+L G
Sbjct: 417 WPRMTHSGAVAGILCG 432