Pairwise Alignments

Query, 567 a.a., cation acetate symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., sodium/solute symporter family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  861 bits (2224), Expect = 0.0
 Identities = 417/578 (72%), Positives = 495/578 (85%), Gaps = 11/578 (1%)

Query: 1   MDIQTWTFILVGITFALYIGIAIWARAGSTSEFYVAGGGVHPVANGMATAADWMSAASFI 60
           M +Q  T+++VG++FALYIGIA+W RAGST EFYVAGGGVHPV NGMATAADWMSAASFI
Sbjct: 1   MGVQGLTYLIVGLSFALYIGIALWTRAGSTKEFYVAGGGVHPVVNGMATAADWMSAASFI 60

Query: 61  SMAGIISFIGYDGTVYLMGWTGGYVLLALCLAPYLRKFGKFTVPDFIGDRYYSRTARMVA 120
           S+AGI+SF+GYDG+VYLMGWTGGYVLLALC+APYLRKFGKFTVPDF+G+RYYS+ AR VA
Sbjct: 61  SLAGIVSFVGYDGSVYLMGWTGGYVLLALCMAPYLRKFGKFTVPDFLGERYYSQAARTVA 120

Query: 121 VFCAIFISFTYVAGQMRGVGVVFARFLEVDINVGIVIGMAIVFFYAVMGGMKGITYTQVA 180
           V CAIFI FTY+AGQMRGVGVVF+RFLEV+++ G+ IGMA+VFFY+V+GGMKGITYTQVA
Sbjct: 121 VICAIFICFTYIAGQMRGVGVVFSRFLEVEVDTGVYIGMAVVFFYSVLGGMKGITYTQVA 180

Query: 181 QYCVLIFAFLVPAIFTSLMMTGNPIPQIGFGSTL-----TGTDDYLLNKLDGLAVELGFT 235
           QYCVLIFAF+VPAIF S+MMTG+ IPQIGFG+ L       +  YLL+KL+ L+V+LGF 
Sbjct: 181 QYCVLIFAFMVPAIFLSVMMTGHIIPQIGFGAQLLDAAGNNSGVYLLDKLNNLSVDLGFA 240

Query: 236 AYTDGSKSMVDVFFICAALMVGTAGLPHVIIRFFTVPKVSDARVSAGWALVFIAFLYTTA 295
            YTDGSKSM+DV  I  ALMVGTAGLPHVI+RFFTVPKV DARVSAGWALVFIA +YTT 
Sbjct: 241 PYTDGSKSMIDVLCITGALMVGTAGLPHVIVRFFTVPKVKDARVSAGWALVFIAIMYTTV 300

Query: 296 PAVAAFARVNMIDTINGPDMQGVTAAEAPTWYRNWESTGLVKWEDKNGDGRMFYS----- 350
           PA+AAF+RVNMI+TINGPD +GV    AP W +NWE TGL+KW+DKNGDG+++Y+     
Sbjct: 301 PALAAFSRVNMIETINGPDQKGVAYETAPNWIKNWEKTGLIKWDDKNGDGKIYYATGKIE 360

Query: 351 -GDARNEMTINNDIIVLASPEIAKLPNWVVALLAAGGLAAALSTAAGLLLVISTAISHDL 409
              + NEM I+NDIIVLA+PEIA LP WV+AL+AAGGLAAALST+AGLLLVIST++SHDL
Sbjct: 361 DAASTNEMKIDNDIIVLATPEIANLPAWVIALVAAGGLAAALSTSAGLLLVISTSVSHDL 420

Query: 410 LKKGFKPDMTDKQELLAARIAAALAIVGAGYLGINPPGFVAQVVAFAFGLAAASFFPAII 469
           LKK   P+++DK+EL+ AR+AA + IV AGY G+NPPGFVA VVAFAFGLAA+S FPAII
Sbjct: 421 LKKNLMPNISDKKELMYARLAAGIGIVIAGYFGVNPPGFVAAVVAFAFGLAASSLFPAII 480

Query: 470 LGIFYKKMNKEGAIIGMLAGITFTAAYIIYFKFINPAASVPANWWFGISPEGIGTLGMCL 529
           +GIF K MNKEGAI GM+ G+ FT+ YI+YFKFI+P A+VPANW+ GISPEGIG +GM +
Sbjct: 481 MGIFSKTMNKEGAIAGMILGLFFTSGYIVYFKFIDPTANVPANWFLGISPEGIGMVGMVI 540

Query: 530 NFVVAIVVNKFTAEVPQDVQDMVESIRYPKGAGAAHSH 567
           NFVVA +V+K TA  P  VQ+MVESIR+PKGAG A  H
Sbjct: 541 NFVVAAIVSKVTAATPVHVQEMVESIRFPKGAGEASDH 578