Pairwise Alignments

Query, 567 a.a., cation acetate symporter from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., sodium/proline symporter (RefSeq) from Shewanella sp. ANA-3

 Score =  120 bits (300), Expect = 2e-31
 Identities = 120/502 (23%), Positives = 212/502 (42%), Gaps = 87/502 (17%)

Query: 1   MDIQTWTFILVGITFALYIGIAIWA-RAGSTSEFYVAGGG-VHPVANGMATAADWMSAAS 58
           M I+T   I       L +GI  WA RA  T + Y+ GG  + P    ++  A  MS   
Sbjct: 1   MTIETPILITFVGYLVLMMGIGFWAYRATDTVDDYILGGRKMGPAVTALSVGASDMSGWL 60

Query: 59  FISMAGIISFIGYDGTVYL-MGWTGGYVLLALCLAPYLRKFGKF-----TVPDFIGDRYY 112
            + + G + ++G  G  ++ +G   G  L  L +A  LR + +      T+PDF   R++
Sbjct: 61  LLGLPGAV-YLGGLGEAWIGIGLVVGAWLNWLFVAKRLRIYTQLADNALTLPDFFEKRFH 119

Query: 113 SRTARMV---AVFCAIFISFTYVAGQMRGVGVVFARFLEVDINVGIVIGMAIVFFYAVMG 169
            +   +    AV   +F +F Y +  M G  ++F +   +D  V +VIG AI+  Y  +G
Sbjct: 120 DKQGYLKLVSAVTILVFFTF-YASSGMVGGAILFEKVFGLDYTVALVIGSAIIVGYTFIG 178

Query: 170 GMKGITYTQVAQYCVLIFAFLVP--AIFTSLMMTGNPIPQIGFGSTLTGTDDYLLNKLDG 227
           G   +++T   Q C+++ A L+   A+F+      +P    G  S     D  +L  +  
Sbjct: 179 GFFAVSWTDFFQGCLMLIALLIIPFAVFS------HPESHAGIESI----DPAMLALISD 228

Query: 228 LAVELGFTAYTDGSKSMVDVFFICAALMVGTAGLPHVIIRFFTVPKVSDARVSAGWALVF 287
               +G  +                A  +G  G PH++ RF  +                
Sbjct: 229 KTTVIGLLSLL--------------AWGLGYFGQPHILSRFMAIG--------------- 259

Query: 288 IAFLYTTAPAVAAFARVNMIDTINGPDMQGVTAAEAPTWYRNWESTGLVKWEDKNGDGRM 347
                 TA A+    R+ M                      +W    L+        G +
Sbjct: 260 ------TADALPLSRRIAM----------------------SWMMLSLIGALATGLAGSL 291

Query: 348 FYSGDARNEMTINNDIIVLASPEIAKLPNWVVALLAAGGLAAALSTAAGLLLVISTAISH 407
           +++    N+   N + + +   + A  P W+  LL A  L+A +ST    LLV S+ I+ 
Sbjct: 292 YFA----NQPLANAETVFIHLAQAAFNP-WIGGLLIAAILSAIMSTIDSQLLVCSSVITE 346

Query: 408 DLLKKGFKPDMTDKQELLAARIAAALAIVGAGYLGINPPGFVAQVVAFAFGLAAASFFPA 467
           D  +K  +P   D++ ++  R+      V AG + +NP   V  +V++A+    A+F P 
Sbjct: 347 DFYRKWLRPQADDRELMMVGRMGVLAIAVIAGIIALNPESSVLSLVSYAWAGFGAAFGPV 406

Query: 468 IILGIFYKKMNKEGAIIGMLAG 489
           ++L +F+K+ ++ GAI  ++ G
Sbjct: 407 VLLSLFWKQYSRNGAIATIIVG 428