Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 219 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  208 bits (530), Expect = 5e-59
 Identities = 114/205 (55%), Positives = 150/205 (73%), Gaps = 4/205 (1%)

Query: 7   IIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESEP-DLLLLDLKMPGAN 65
           IIIADDHPLFRNAL Q++  A +     EADS +AL  LL + +   DL+LLDL+MPG++
Sbjct: 8   IIIADDHPLFRNALRQALSGAFADTQWFEADSAEALQGLLEQGNTAYDLVLLDLQMPGSH 67

Query: 66  GMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAALNQVLNG 125
           G S LIHLR+ +P+LP+VVISA E+   +S+   +G+ GFIPKS+ M +L  AL  VL G
Sbjct: 68  GYSTLIHLRTHFPELPVVVISAHEDAMTISRAVHYGSAGFIPKSASMETLSEALTAVLYG 127

Query: 126 EPYFPAHLLVDGF---VGNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIK 182
           + + P ++ +        + +A K+A LTPQQYKVL M ++GLLNKQIAY+L VSEATIK
Sbjct: 128 DIWLPDNIELQEINEDATDQMAAKLADLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIK 187

Query: 183 AHMTAIFRKLGVKNRTQAVILLKEM 207
           AH TAIFRKLGV+NRTQAVI L+++
Sbjct: 188 AHATAIFRKLGVRNRTQAVIALQQL 212