Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (249), Expect = 2e-26
 Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 10/208 (4%)

Query: 1   MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADS-LDALLTLLNKESEPDLLLLDL 59
           M   Y++++ DDHPL R  + Q +          EA S LDAL  +   E+EPD++LLDL
Sbjct: 1   MGKPYSVLVVDDHPLLRRGICQLITSDSDFTLFGEAGSGLDALSAIA--ENEPDIVLLDL 58

Query: 60  KMPGANGMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAAL 119
            M G  G+  L  LR E     IV+++ S+    V ++   GA G++ K ++   L+  L
Sbjct: 59  NMKGMTGLDTLNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKL 118

Query: 120 NQVLNGEPYFPAHLLVDGFV-----GNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYEL 174
              + G         V+ F+     G D    +  LTP++ ++L  L++G  N+ I+ +L
Sbjct: 119 KNAMQGHRVISES--VEDFIYELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQL 176

Query: 175 NVSEATIKAHMTAIFRKLGVKNRTQAVI 202
           ++SE T+K H+  + RK   K+RT+  +
Sbjct: 177 HISEGTVKVHVKNLLRKANAKSRTEMAV 204