Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., DNA-binding nitrate/nitrite response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 1e-26
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 1   MDSTYTIIIADDHPLFRNALFQSVHMAISGANLLEADS-LDALLTLLNKESEPDLLLLDL 59
           M   Y++++ DDHPL R  + Q +      +   E  S LDAL ++     EPD++LLDL
Sbjct: 1   MGKPYSVLVVDDHPLLRKGICQLITSDPDFSLFGEVGSGLDALSSVAT--DEPDIVLLDL 58

Query: 60  KMPGANGMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAAL 119
            M G  G+  L  +R E     IV+++ S+    V ++   GA G++ K ++   L+  L
Sbjct: 59  NMKGMTGLDTLNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKL 118

Query: 120 NQVLNGEPYFP---AHLLVDGFVGNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNV 176
              ++G        A  L +     D  E V++LTP++ ++L  L++GL N+ I+  L++
Sbjct: 119 KNTMSGHRVISEEVAEYLYELKNAADEQEWVSSLTPRELQILQQLAEGLSNRMISEHLHI 178

Query: 177 SEATIKAHMTAIFRKLGVKNRTQAVI 202
           SE T+K H+  + RK   K+RT+  +
Sbjct: 179 SEGTVKVHVKNLLRKANAKSRTEMAV 204