Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 206 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (380), Expect = 1e-41
 Identities = 87/204 (42%), Positives = 130/204 (63%), Gaps = 3/204 (1%)

Query: 4   TYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALL-TLLNKESEPDLLLLDLKMP 62
           T+ ++IADDHPL+ +AL   +   + G  + +A++   L  +L  +  E DLL++DL MP
Sbjct: 4   TFHVMIADDHPLYLDALVNGLVSHLPGTQVSQANNYIELFDSLYLQVEEIDLLIMDLFMP 63

Query: 63  GANGMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAALNQV 122
           G++G +GL  LR+++P LPIVVISA ++    SQ   HGA  FI KS+   ++   + Q+
Sbjct: 64  GSSGYAGLSFLRTQFPTLPIVVISALDDLIARSQCIQHGA-AFISKSTAPTNIFKQVEQI 122

Query: 123 LNGEPYFPAHLLVDGFVGNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIK 182
           L+G   FP    +   +    A+K+  LTP Q++VL +++ G  NK IA  LN+SE T+K
Sbjct: 123 LDGSYQFPL-TQIKSSIETINAKKIKTLTPSQFRVLHLIAAGHSNKTIADSLNISEKTVK 181

Query: 183 AHMTAIFRKLGVKNRTQAVILLKE 206
           AH++AIF KL VKNRTQA +LL E
Sbjct: 182 AHISAIFEKLDVKNRTQAALLLSE 205