Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  209 bits (533), Expect = 2e-59
 Identities = 115/205 (56%), Positives = 149/205 (72%), Gaps = 4/205 (1%)

Query: 7   IIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESEP-DLLLLDLKMPGAN 65
           IIIADDHPLFRNAL Q++  A       EADS DAL ++L+  +   DL+LLDL+MPG++
Sbjct: 8   IIIADDHPLFRNALRQALSSAFEHTQWFEADSADALQSVLDSPTVSYDLVLLDLQMPGSH 67

Query: 66  GMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAALNQVLNG 125
           G S LIHLRS YPDLP++VISA E+ + +S+   +G  GFIPKS+ M +L  AL  VL G
Sbjct: 68  GYSTLIHLRSHYPDLPVIVISAHEDINTISRAIHYGGSGFIPKSASMETLKEALTAVLYG 127

Query: 126 EPYFPAH---LLVDGFVGNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIK 182
           + + P     + ++    + +A K++ LTPQQYKVL M ++GLLNKQIAY+L VSEATIK
Sbjct: 128 DIWLPKGADIIPIEDDSTDKMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIK 187

Query: 183 AHMTAIFRKLGVKNRTQAVILLKEM 207
           AH TAIFRKLGV+NRTQAVI L ++
Sbjct: 188 AHATAIFRKLGVRNRTQAVIALGQL 212