Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  169 bits (427), Expect = 5e-47
 Identities = 86/210 (40%), Positives = 138/210 (65%), Gaps = 5/210 (2%)

Query: 3   STYTIIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESEPDLLLLDLKMP 62
           S   + IADDHPLFR AL Q+V   ++ A +LEA++   L+TL+    + +L+ LDL MP
Sbjct: 2   SQIKVAIADDHPLFRTALTQAVLKNVNTAEVLEAENFQELITLVENNPDIELIFLDLHMP 61

Query: 63  GANGMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAALNQV 122
           G  G +GL  L++ +PD+ ++++S+ ++P ++ +  + GA  FIPKS+ +  +  A+  V
Sbjct: 62  GNEGFTGLTLLQNHFPDIAVIMVSSDDQPEIIRKAINFGASAFIPKSASLTQISTAIATV 121

Query: 123 LNGEPYFPAH--LLVDGFVGND---LAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVS 177
           L GE + P H  + VD     +   LA+++A LTPQQY VL  +++G LNKQIAY+L++ 
Sbjct: 122 LEGEVWLPEHTDINVDQQTAAEHQRLAKQLAQLTPQQYTVLASIANGRLNKQIAYDLDIK 181

Query: 178 EATIKAHMTAIFRKLGVKNRTQAVILLKEM 207
           E T+K H++AI  KL V NRTQA ++ +++
Sbjct: 182 ETTVKKHVSAILVKLEVYNRTQAGLVFQQL 211