Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 12/209 (5%)

Query: 1   MDSTYTIIIADDHPLFRNALFQSV----HMAISGANLLEADSLDALLTLLNKESEPDLLL 56
           M   Y++++ DDHPL R  + Q +      ++ G      D+L A+ T      EPD++L
Sbjct: 1   MGKPYSVLVVDDHPLLRKGICQLIASDPDFSLFGEVGGGLDALSAVAT-----DEPDIVL 55

Query: 57  LDLKMPGANGMSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLI 116
           LDL M G  G+  L  +R E     IV+++ S+    V ++   GA G++ K ++   L+
Sbjct: 56  LDLNMKGMTGLDTLNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLL 115

Query: 117 AALNQVLNGEPYFPAHL---LVDGFVGNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYE 173
             L   + G       +   L +     D  E +++LTP++ ++L  L++GL N+ I+  
Sbjct: 116 DKLKNAMLGHRVISDEVEEYLYELKNAADEQEWISSLTPRELQILQQLAEGLSNRMISEH 175

Query: 174 LNVSEATIKAHMTAIFRKLGVKNRTQAVI 202
           L++SE T+K H+  + RK   K+RT+  +
Sbjct: 176 LHISEGTVKVHVKNLLRKANAKSRTEMAV 204