Pairwise Alignments

Query, 435 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., anaerobic C4-dicarboxylate membrane transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  286 bits (731), Expect = 1e-81
 Identities = 165/450 (36%), Positives = 248/450 (55%), Gaps = 18/450 (4%)

Query: 1   MIWVELAIVLLFIFIGARIGGIGIGLAGGAGVIALSLILGVPTKQAFIPVDVILIIMSVI 60
           MI +E  +VL  + +G R GG+G+GL  G G+  L+ + G+   Q   PV V+L I++VI
Sbjct: 1   MILMEFIVVLGCLLLGTRYGGMGLGLISGIGLFLLTFVFGLAPGQP--PVQVMLTILAVI 58

Query: 61  TAIAAMQVAGGMDWLVQLAENFLRKHPERITFYAPIVTFLMTLMAGTGHTAFSTLPVIAE 120
              A +Q AGG+D ++Q AE  LR+HP+ IT  AP+ T+ +T + GTGH  ++  P+I++
Sbjct: 59  GCAAVLQTAGGLDVMMQFAERLLRRHPQYITILAPLTTWTLTFLCGTGHVVYTMFPIISD 118

Query: 121 VAKGQGVRPSRPLSIAVVASQIAITASPISAAVVAFAAML-----VPFGVDYLTLLAICI 175
           +A  + +RP RP+++A VASQ+AI ASP+S AVV+  ++L     V      L +L + +
Sbjct: 119 IALKKNIRPERPMAVASVASQMAICASPVSVAVVSMVSILAAQQGVGHAYSMLEILMVSV 178

Query: 176 PTTFAACMVGAFVANFMGSELKDDPIYQERLAQGLIKLAGTQKREIL------PTAKTAT 229
           P +    +V A  +   G +L  D  +QER+   + +     K E L        A  AT
Sbjct: 179 PASLCGVLVAALWSLRRGKDLDKDEEFQERIQDPVQRAFIYDKGETLLNQTFPKQAYWAT 238

Query: 230 YIFLTAIILVVCYAAAISNSIGLIENPA----LGRNEAIMTFMLAAAAGIVLLTKIDAAQ 285
            IF  AI  VV   +  S    + E       L  N  I   ML A A I++  K+  A+
Sbjct: 239 GIFFAAIAAVVLLGS-FSELRPVFEEKGKLAPLSMNLVIQMMMLIAGAFILMSCKVKPAE 297

Query: 286 IPAASTFRSGMTACVCVLGVAWLGSTFVNAHVDGIKEVAGTLLADYPWMLALVLFFASML 345
           I     F++GM A   V GVAW+  TF  +H+D +KE    ++ + PW  ALVLF  S L
Sbjct: 298 IANGPVFKAGMVAIFSVFGVAWMSDTFFISHMDVLKENLSHVVQNQPWTYALVLFLISKL 357

Query: 346 LYSQGATTVALMPAALAIGVAPLTAVASFAAVSALFVLPTYPTLLAAVEMDDTGSTRIGS 405
           + SQ A   A+ P  LA+GV P   +A   A    FVLPTYP+ LA +  D +G+T+IG 
Sbjct: 358 VNSQAAALTAIAPMGLALGVDPKLLIAFLPASYGYFVLPTYPSDLACIGFDRSGTTKIGK 417

Query: 406 YVFNHPFFIPGVVTIASAVAFGFLFGSLFI 435
           ++ NH F IPG++ + +A   G+L  +  +
Sbjct: 418 FIINHSFIIPGLIGVGTASTVGYLLATALL 447