Pairwise Alignments

Query, 435 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  348 bits (892), Expect = e-100
 Identities = 186/437 (42%), Positives = 272/437 (62%), Gaps = 9/437 (2%)

Query: 4   VELAIVLLFIFIGARIGGIGIGLAGGAGVIALSLILGV-PTKQAFIPVDVILIIMSVITA 62
           ++LA VL  I IGAR+GGIG+G+ GG G+  L+ + G+ PT     P+DV+L+I +VI+A
Sbjct: 3   LQLAFVLTAIIIGARLGGIGLGVMGGVGLGILTFVFGLQPTAP---PIDVMLMIAAVISA 59

Query: 63  IAAMQVAGGMDWLVQLAENFLRKHPERITFYAPIVTFLMTLMAGTGHTAFSTLPVIAEVA 122
            + MQ AGG+D++V+LAE+ LRK+P  +T  +P+VT+L T +AGTGH A+S LPVIAEVA
Sbjct: 60  ASCMQAAGGLDYMVKLAEHLLRKNPSHVTLLSPLVTYLFTFIAGTGHVAYSVLPVIAEVA 119

Query: 123 KGQGVRPSRPLSIAVVASQIAITASPISAAVVAFAAMLVPFGVDYLTLLAICIPTTFAAC 182
               +RP RPL IAV+ASQ AITASPISAA VA   +L  F +    +L I IP T    
Sbjct: 120 TETKIRPERPLGIAVIASQQAITASPISAATVALLGLLAGFDITLFDILKITIPATIIGV 179

Query: 183 MVGAFVANFMGSELKDDPIYQERLAQGLIKLAGTQKREI--LPTAKTATYIFLTAIILVV 240
           +VGA  +  +G EL +DP YQ+RL +GL      + +++    +A  +  IF+ A   +V
Sbjct: 180 LVGALFSMKVGKELIEDPEYQKRLKEGLFNDKKIEIKDVKNKRSAMLSVLIFILATAFIV 239

Query: 241 CYAAAISNSIGLI---ENPALGRNEAIMTFMLAAAAGIVLLTKIDAAQIPAASTFRSGMT 297
            + +        +   E   LG +  I   ML+AAA I+++TK D  +    S F +GM 
Sbjct: 240 LFGSFEGMRPSFLIDGEIVTLGMSSIIEIVMLSAAAIILIVTKTDGIKATQGSVFPAGMQ 299

Query: 298 ACVCVLGVAWLGSTFVNAHVDGIKEVAGTLLADYPWMLALVLFFASMLLYSQGATTVALM 357
           A + + G+AW+G TF+  ++  +      ++   PW+  + LF  S+LLYSQ AT  ALM
Sbjct: 300 AVIAIFGIAWMGDTFLQGNMAQLTLSIEGIVRQMPWLFGIALFVMSILLYSQAATVRALM 359

Query: 358 PAALAIGVAPLTAVASFAAVSALFVLPTYPTLLAAVEMDDTGSTRIGSYVFNHPFFIPGV 417
           P  +A+G++P   +A F AV+  F +P YPT++AA+  D TG+T+IG YV NH F +PG+
Sbjct: 360 PLGIALGISPYMLIALFPAVNGYFFIPNYPTVVAAINFDRTGTTKIGKYVLNHSFMMPGL 419

Query: 418 VTIASAVAFGFLFGSLF 434
           V+   A+  G LF  +F
Sbjct: 420 VSTVVAIVLGLLFIQIF 436