Pairwise Alignments

Query, 312 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (262), Expect = 2e-27
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 10/187 (5%)

Query: 135 IITFRNIHDYKISLAEAERQSQI----DPLTQLKNRRGFFTW-----SEPIAPETLLGLI 185
           ++T   +    ++L   +R+ +I    D LT   NR+ F  +      +    +T + ++
Sbjct: 300 VVTIGILFISNMTLGRYQRKLEIMASTDKLTGAANRQVFEEYFHQALDKAKLSQTSISIL 359

Query: 186 IFDIDHFKQINDTYGHPAGDYVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANV 245
           + DIDHFK++ND+YGH  GD VL+ +  LL   L P     RWGGEEFLV     D++  
Sbjct: 360 LIDIDHFKKVNDSYGHSVGDLVLKTVTNLLRSQLKPQDILCRWGGEEFLVLLPEMDLSRA 419

Query: 246 IGLAENIRDYVESHTLMWQGQQIALTLSAGCTMGAMMSHNWDNLLHTADQALLSAKRLGR 305
             LAE  RD +    L   G  IA+T+S G      +    ++L+  AD AL  AK  GR
Sbjct: 420 AELAERFRDSISQRELKVNGVHIAITVSIGVAEYQKLEPA-EDLIKRADLALYQAKEAGR 478

Query: 306 NRVIADR 312
           N+V+ ++
Sbjct: 479 NQVVLNQ 485