Pairwise Alignments

Query, 312 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  109 bits (272), Expect = 2e-28
 Identities = 73/180 (40%), Positives = 97/180 (53%), Gaps = 10/180 (5%)

Query: 136 ITFRNIHDYKISLAEAERQSQIDPLTQLKNRRGF---FTWSEPIA--PETLLGLIIFDID 190
           IT R +H+    L E   QS ID LT +KNR  F         I+   ET + L++ DID
Sbjct: 438 ITLRELHEVNQKLTE---QSTIDSLTGVKNRSAFDKRLLAESRISRRQETPIALLMLDID 494

Query: 191 HFKQINDTYGHPAGDYVLRQIAGLLEQNLP-PLSCCVRWGGEEFLVCFECDDMANVIGLA 249
            FK IND +GH AGD  L+ IA  L+Q+L  P     R+GGEEF +          + +A
Sbjct: 495 RFKSINDQFGHLAGDQALKLIAQTLQQHLKRPTDLVSRFGGEEFAIILPNTTADGALQVA 554

Query: 250 ENIRDYVESHTLMWQGQQIALTLSAGCTMGAMMSHNWD-NLLHTADQALLSAKRLGRNRV 308
           E+IRD V    L W+G+ I LT+S G +   +M+      LL  AD+AL  AK  GRN+V
Sbjct: 555 ESIRDTVSCIGLTWEGKPIPLTVSIGVSADVIMNEQHSTELLEQADKALYQAKNSGRNQV 614