Pairwise Alignments

Query, 312 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 312 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (484), Expect = 3e-53
 Identities = 108/313 (34%), Positives = 170/313 (54%), Gaps = 12/313 (3%)

Query: 9   RLLSDQDLQGYVSRILDVIPLPIIISKSSVLGQGEREHLH-----FNKAFVKELGYTMAQ 63
           R L  ++ +  + + L+ IP+PI++S++  + +G R   H      N AFV++LGY +++
Sbjct: 2   RRLFPEESEALLFKTLNYIPIPILLSEALAV-EGRRPSTHRIHRFMNHAFVEQLGYNLSE 60

Query: 64  IPNIETWFERAYPQIDYRQEIIAQWQKTVDEARAQGEDVAHMPALIMCADGVQRWFSVSA 123
           IPNI  WF+  YP    R++ + +W   V E+  QG   A     I C  G  RWF ++A
Sbjct: 61  IPNIAAWFDTVYPDPIIREQAMLEWDSVVYESEQQGLSTAGFKTFIRCGTGQFRWFLINA 120

Query: 124 QIEPSCRDDLHIITFRNIHDYKISLAEAERQSQIDPLTQLKNRRGF-----FTWSEPIAP 178
           Q+    + +L+I+T R++H  ++ L E ERQS+ D LT L NRR          ++    
Sbjct: 121 QLTTENQSNLNIVTMRDVHQLQLLLEENERQSKTDLLTGLANRRQIEDVLAAAMAKSDRT 180

Query: 179 ETLLGLIIFDIDHFKQINDTYGHPAGDYVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFE 238
           ++ L +++ DID FK IND +GH  GD VL+ +A  L+ +    +C  RWGGEEFL+  E
Sbjct: 181 QSSLCVVMCDIDFFKNINDNFGHLCGDDVLKIVASQLQHSAQAATCIARWGGEEFLIVLE 240

Query: 239 CDDMANVIGLAENIRDYVESHTLMWQGQQIALTLSAGCTMGAMMSHNWDNLLHTADQALL 298
                +   L E +R  + +      GQ + LT+S GC      + +  +LL   D+AL 
Sbjct: 241 HVVPESAGVLCEQLRGLIAATDYQSYGQHMQLTMSFGCVQ-YQANESLQSLLCRVDKALY 299

Query: 299 SAKRLGRNRVIAD 311
            AK  GRN+V+ D
Sbjct: 300 QAKNGGRNQVVMD 312