Pairwise Alignments

Query, 312 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 96.3 bits (238), Expect = 9e-25
 Identities = 67/168 (39%), Positives = 86/168 (51%), Gaps = 10/168 (5%)

Query: 151 AERQSQIDPLTQLKNRRGFFTWSEPIAPET--LLGLIIFDIDHFKQINDTYGHPAGDYVL 208
           AER +  D LT+L NRR FF     IA ++   L  I+FDID FK +ND +GH  GD  L
Sbjct: 139 AERLANTDELTKLYNRRAFFNLGLSIAQQSGQALAFIMFDIDRFKHVNDRWGHTTGDAAL 198

Query: 209 RQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYVESHTLMWQGQQI 268
             IA L +  L P+    R GGEEF +            LAE+IR   E   L   GQ I
Sbjct: 199 IHIAKLTQAILKPVDILGRLGGEEFGILLPDLHHEQACQLAESIRCRFEEQPLALNGQII 258

Query: 269 ALTLS---AGCTMGAMMSHN-----WDNLLHTADQALLSAKRLGRNRV 308
             T S   A  T+  + S        + L ++ADQA++ AKR GRN+V
Sbjct: 259 KCTASFGIASITIPVIHSEKEAQNLLETLFNSADQAMMQAKRNGRNQV 306