Pairwise Alignments

Query, 312 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., sensory box/GGDEF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 4e-29
 Identities = 66/171 (38%), Positives = 98/171 (57%), Gaps = 13/171 (7%)

Query: 145 KISLAEAERQSQIDPLTQLKNRRGFFTWSEPIAPET--------LLGLIIFDIDHFKQIN 196
           K +  + ER SQ D LTQL NRR    W + +  E         +  L++ DIDHFK IN
Sbjct: 146 KAANEQLERLSQTDGLTQLHNRRH---WQQCLEHEYDLYARYSGIASLVMIDIDHFKNIN 202

Query: 197 DTYGHPAGDYVLRQIAGLLEQNLPPLSCCVRWGGEEFLVCFECDDMANVIGLAENIRDYV 256
           DTYGH AGD V++ IA +L  +L    C  R+GGEEF V       A+ +   E +R+ +
Sbjct: 203 DTYGHLAGDKVIQHIAHILSHSLRETDCAGRYGGEEFAVVMPSTCGADALNFTERLREKI 262

Query: 257 ESHTLMWQGQQIALTLSAG-CTMGAMMSHNWDNLLHTADQALLSAKRLGRN 306
            S T++++G +I +T+S G C +G  +S +  + +  +D+AL  AK+ GRN
Sbjct: 263 ASSTVVYEGLKIKVTVSLGVCELGKHISSS-SSWISCSDKALYEAKQKGRN 312