Pairwise Alignments

Query, 158 a.a., tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL from Vibrio cholerae E7946 ATCC 55056

Subject, 154 a.a., RNA methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  216 bits (551), Expect = 1e-61
 Identities = 105/157 (66%), Positives = 127/157 (80%), Gaps = 4/157 (2%)

Query: 1   MFDIALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRH 60
           MF IALYEPEIAPNTGNIIRLCAN G  LHLIEPLGFDLEEKK+RRAGLDY DL RVTRH
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGCQLHLIEPLGFDLEEKKLRRAGLDYSDLTRVTRH 60

Query: 61  KDYAAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPA 120
           KD+ +F+  +  +    R+ ACTTK ++ H +  F++ DVLLFGPETRGLP  +I S+P 
Sbjct: 61  KDFESFLSAMAGK----RIMACTTKGSRPHSEIAFEKDDVLLFGPETRGLPMPIIESIPT 116

Query: 121 EQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGA 157
            QR+RIPM   +RSLNLSN+VAII++EAWRQ+G++GA
Sbjct: 117 SQRLRIPMAASSRSLNLSNSVAIISYEAWRQLGYEGA 153