Pairwise Alignments

Query, 158 a.a., tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL from Vibrio cholerae E7946 ATCC 55056

Subject, 154 a.a., RNA methyltransferase, TrmH family, group 2 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (549), Expect = 2e-61
 Identities = 106/157 (67%), Positives = 127/157 (80%), Gaps = 4/157 (2%)

Query: 1   MFDIALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRH 60
           MF IALYEPEIAPNTGNIIRLCAN G+ LHLIEPLGFD EEKK+RRAGLDY DL  VTRH
Sbjct: 1   MFHIALYEPEIAPNTGNIIRLCANNGSQLHLIEPLGFDFEEKKLRRAGLDYADLTNVTRH 60

Query: 61  KDYAAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPA 120
           K++ AF++ +  +    R+ ACTTK ++ H +  F + DVLLFGPETRGLP  +I S+P 
Sbjct: 61  KNFDAFLKAMAGK----RIMACTTKGSRPHSELSFAKDDVLLFGPETRGLPMSIIESIPT 116

Query: 121 EQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGA 157
           EQR+RIPM   +RSLNLSNAVAII++EAWRQ+GF+GA
Sbjct: 117 EQRLRIPMAATSRSLNLSNAVAIISYEAWRQLGFEGA 153