Pairwise Alignments

Query, 158 a.a., tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL from Vibrio cholerae E7946 ATCC 55056

Subject, 254 a.a., RNA methyltransferase, TrmH family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 4   IALYEPEIAPNTGNIIRLCANCGA-NLHLIEPLGFDLEEKKVRRAGLDYHDLARV----T 58
           + + +     N G + R C N GA ++ L++P  +++++ +          L RV    T
Sbjct: 7   VVMVKTRFPENVGMVARACVNMGAQDIVLVDPERWEIDKARPLATAKGEPLLERVKVVGT 66

Query: 59  RHKDYA--AFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGD--VLLFGPETRGLPAEL 114
             +  A    +       G +R    T +     + A    G+   LL GPE RGL  + 
Sbjct: 67  LSEAVADCTAVWGTTARTGGWRREILTPEKAGPEMAASLADGERVALLLGPEDRGLNNDE 126

Query: 115 IASLPAEQRIRIPMMPEARSLNLSNAVAIIAFE 147
           I      + + IP  PEA SLN++ A  I+ +E
Sbjct: 127 IEH--CTRLLTIPTAPEASSLNVAQASLIVLYE 157