Pairwise Alignments

Query, 464 a.a., two-component system sensor histidine kinase CpxA from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (635), Expect = 2e-70
 Identities = 159/458 (34%), Positives = 248/458 (54%), Gaps = 17/458 (3%)

Query: 9   NNLYGRIFAIFWFTMLLVLFAVLTLPHLDPRKSRDLSPETHQRLLESRDRFEQQFRNQSD 68
           N ++ ++   FW    L++  V  LP L     +   P   Q LLE   R  ++ +   +
Sbjct: 8   NRIFIKLLLSFWLCSSLIIAIVGLLPLLQQNHDQAPIPPHLQGLLE---RVVERIQESPE 64

Query: 69  LRAILFQLEGPDSQHRKHD--GQP-RFFITDLESNIITNSKQTDFRFKAMQNFCSSIESV 125
           L      ++     HR  +   +P RF++ D +  +I N + +    + ++ F    +  
Sbjct: 65  L----LTMKRDKHWHRLKEMGNKPVRFYVADEQGQLINNQRVS----RGIRRFMLMADEA 116

Query: 126 QKPQQRLYGRYMLAGPVPITLAKQDLLLYVGMRWDEPPPFLLRLFDKPFQLLLAIMLVST 185
             P    +   +L GP+P  +  +   LY  +    P P+     +     L   +L+S 
Sbjct: 117 GHPISHQFKSELLFGPMPFEIEGKRYTLYGRLAEMHPRPWFFFFAENIALTLTLAILLSG 176

Query: 186 PLLLWLAWALSKPAQNLAQAAQRVARGEFVH--DPKLERGTAEFQQAGRSFNQMVDAVNQ 243
            L   LAW L KP + L Q+A+ VA G+  H  D        E  Q  +SFN M DA+  
Sbjct: 177 LLCGLLAWHLGKPLRALKQSAEAVASGDLGHRADASTTARKDEIGQLAQSFNAMADAIES 236

Query: 244 MVSGQQRLLSDISHELRSPLTRLRMANALAMRKLGSSSELERIDTEAQRLEQMIGDLLAL 303
           MV+ QQRL+SDISHELR+PLTRL++A AL  +K  +S+E++RI  EA++LE MI +LL L
Sbjct: 237 MVNSQQRLISDISHELRTPLTRLQLALALTRKKGQASTEIDRIGYEAEQLEAMIAELLEL 296

Query: 304 SRMQINSHLMREVQPLSSLWEELLKDAQFEAEQMHKMLTFDAIPERTINGTPKLLMSALE 363
           SR++++ H  +    L+    ++L DA+FEAEQ  K L  D      +   P+ L  A+E
Sbjct: 297 SRVKLDIHEHKHRLSLAETLGQVLDDAEFEAEQQQKSLVIDIDDSLMLMLNPRPLARAIE 356

Query: 364 NVVRNAIHYGQQQIHVAFTIQDQQLIVSVDDDGEGVPEE-ELADIFRPFYRVSTARDRHS 422
           N++RNAI Y +Q+I ++ T + +Q+I+++ DDG G+ +E +L  IF PFYR  +AR+R S
Sbjct: 357 NLLRNAIRYAEQEISISATAEPEQVILTIKDDGPGIEDEADLQAIFEPFYRPQSARERES 416

Query: 423 GGTGLGLAITENAIRQHSGTISANRSHLGGLQVRFTLP 460
           GG GLGLAI + AI+ H G I A+ +   GL++   LP
Sbjct: 417 GGWGLGLAIAKAAIQAHQGQIVASNAAPHGLEITIRLP 454