Pairwise Alignments

Query, 464 a.a., two-component system sensor histidine kinase CpxA from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., sensor protein CpxA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  243 bits (621), Expect = 7e-69
 Identities = 152/455 (33%), Positives = 247/455 (54%), Gaps = 12/455 (2%)

Query: 9   NNLYGRIFAIFWFTMLLVLFAVLTLPHLDPRKSRDLSPETHQRLLESRDRFEQQFRNQSD 68
           N L+ ++   FW    L++  V  LP L     R   P   Q++L +  +  Q+  N + 
Sbjct: 3   NRLFIKLLLGFWLCSSLIIALVGLLPLLQQNHDRAPIPPHLQKVLATIAQRIQE--NPTL 60

Query: 69  LRAILFQLEGPDSQHRKHDGQP-RFFITDLESNIITNSKQTDFRFKAMQNFCSSIESVQK 127
           L++   +      +HR  +G+P R ++T+ +  +I  ++ +    + +++F    +  ++
Sbjct: 61  LKSDFLRRW---ERHRDMEGKPLRLYLTNSQGQVINTNRIS----RGVRSFMLMADEEKQ 113

Query: 128 PQQRLYGRYMLAGPVPITLAKQDLLLYVGMRWDEPPPFLLRLFDKPFQLLLAIMLVSTPL 187
           P    +   ++ GP   TL  +   LY  +    P P+     +     L   +L+S  L
Sbjct: 114 PISHQFKDELVFGPYQFTLEGETYFLYGRLPDTHPRPWFFFFIENKLLTLSLAILLSGLL 173

Query: 188 LLWLAWALSKPAQNLAQAAQRVARGEFVH--DPKLERGTAEFQQAGRSFNQMVDAVNQMV 245
              LAW L KP ++L ++A  +A G+  +  D    +   E  Q   +FN M D++  MV
Sbjct: 174 CALLAWHLGKPLRSLKKSADALAEGDLSNRVDKTTTQRNDEIGQLATAFNSMADSIEAMV 233

Query: 246 SGQQRLLSDISHELRSPLTRLRMANALAMRKLGSSSELERIDTEAQRLEQMIGDLLALSR 305
             QQRL+ DISHELR+PLTRL+++ ALA +K   ++E +RI  EA++LEQ+I +LL LSR
Sbjct: 234 KNQQRLMGDISHELRTPLTRLQLSLALARKKGQQTTETDRIAYEAEQLEQLIAELLELSR 293

Query: 306 MQINSHLMREVQPLSSLWEELLKDAQFEAEQMHKMLTFDAIPERTINGTPKLLMSALENV 365
           ++++++  +    L+    ++L DA+FEA+Q  K +T D      ++  PK L  A+EN+
Sbjct: 294 VKLSTNETKVCLGLAESLSQVLDDAEFEADQQGKKITIDIDEAIELSHYPKSLSRAIENL 353

Query: 366 VRNAIHYGQQQIHVAFTIQDQQLIVSVDDDGEGVPEEELADIFRPFYRVSTARDRHSGGT 425
           +RNAI Y +  IH+  +    Q+ +++ DDG G+   EL  IF+PFYR  +AR R SGG 
Sbjct: 354 LRNAIRYAKSDIHLHASQTSGQVQITIKDDGPGIDPAELESIFKPFYRPDSARQRESGGW 413

Query: 426 GLGLAITENAIRQHSGTISANRSHLGGLQVRFTLP 460
           GLGLAITE AI  H G I A      GL+V  +LP
Sbjct: 414 GLGLAITEAAISAHKGKIKAENREPHGLEVNISLP 448