Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  178 bits (451), Expect = 9e-50
 Identities = 102/225 (45%), Positives = 140/225 (62%), Gaps = 5/225 (2%)

Query: 1   MAHILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSD-EIDLILLDVMMPKLNG 59
           M+ +LLIDDD EL  LL   L  EGF     +DG++   A+++ +   ++LDVM+P  +G
Sbjct: 1   MSELLLIDDDQELCELLISWLAQEGFVAHACHDGKSARQALAEHQPAAVVLDVMLPDGSG 60

Query: 60  METLKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRT 118
           +E LK+LR E    PVLML+ +GE +DR++GLELGADDYL KP   REL AR+RA+LRR+
Sbjct: 61  LELLKQLRSEHPQLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRS 120

Query: 119 QNGLTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLS 178
           Q   TP     +E  D+   P +  A   G  + LT +E  +L   +  PG  + K+ L+
Sbjct: 121 QPTATPSQ---VELGDLCYSPARGIASVGGAEVSLTLSEGRILEALLAQPGEPMDKQALA 177

Query: 179 IEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYL 223
              LG+ L  +DR++DMHVSNLR+KL    DG  RI  LR RGYL
Sbjct: 178 QHALGRKLTLYDRSLDMHVSNLRRKLGPHADGNPRIVALRSRGYL 222